RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 NHLRC4P0CG21 123 aaPredicted RBP11.79□□□□□ -0.52
CCDC88B-210ENST00000494566 TMEM262E9PQX1 116 aa11.78□□□□□ -0.52
CCDC88B-210ENST00000494566 TRAV25A0A0B4J276 109 aa11.78□□□□□ -0.52
CCDC88B-210ENST00000494566 TRBV30A0A0K0K1B3 111 aa11.78□□□□□ -0.52
CCDC88B-210ENST00000494566 TINCRA0A1B0GVN0 87 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE7O76087 117 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE12FP0CL80 117 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE12GP0CL81 117 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 GAGE12IP0CL82 117 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 SOSTDC1Q6X4U4 206 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 PRIMA1Q86XR5 153 aa11.77□□□□□ -0.52
CCDC88B-210ENST00000494566 CITED1Q99966 193 aa11.77□□□□□ -0.53
CCDC88B-210ENST00000494566 NTM-AS1Q6ZSK4 140 aa11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 SPANXA1Q9NS26 97 aa11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 RNASE1P07998 156 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 IL17DQ8TAD2 202 aa11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 Q9HAA7 133 aa11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 NDUFV3P56181 108 aaKnown RBP11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 LINC00242Q5T6M2 205 aa11.76□□□□□ -0.53
CCDC88B-210ENST00000494566 CHCHD5Q9BSY4 110 aa11.75□□□□□ -0.53
CCDC88B-210ENST00000494566 DNAJC30Q96LL9 226 aa11.75□□□□□ -0.53
CCDC88B-210ENST00000494566 K7EQD1 137 aa11.74□□□□□ -0.53
CCDC88B-210ENST00000494566 LINC00308Q8TCZ7 52 aa11.74□□□□□ -0.53
CCDC88B-210ENST00000494566 TRRAPQ9Y4A5 3859 aa11.74□□□□□ -0.53
CCDC88B-210ENST00000494566 TRGV2A0A075B6R0 118 aa11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 J3QKU1 62 aa11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 RPL36AP83881 106 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 RPL36ALQ969Q0 106 aaKnown RBP11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 SPANXDQ9BXN6 97 aa11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 C19orf73Q9NVV2 129 aa11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 SPANXCQ9NY87 97 aa11.73□□□□□ -0.53
CCDC88B-210ENST00000494566 PLAC8L1A1L4L8 177 aa11.72□□□□□ -0.53
CCDC88B-210ENST00000494566 KRTAP10-3P60369 221 aa11.72□□□□□ -0.53
CCDC88B-210ENST00000494566 IGLV1-51P01701 117 aa11.72□□□□□ -0.53
CCDC88B-210ENST00000494566 IFITM1P13164 125 aa11.72□□□□□ -0.53
CCDC88B-210ENST00000494566 LST1O00453 97 aa11.71□□□□□ -0.53
CCDC88B-210ENST00000494566 CIRBPQ14011 172 aaKnown RBP11.71□□□□□ -0.54
CCDC88B-210ENST00000494566 GAGE6Q13070 117 aa11.7□□□□□ -0.54
CCDC88B-210ENST00000494566 SPATA3Q8NHX4 192 aa11.7□□□□□ -0.54
CCDC88B-210ENST00000494566 C16orf95Q9H693 158 aa11.7□□□□□ -0.54
CCDC88B-210ENST00000494566 ATRQ13535 2644 aa11.7□□□□□ -0.54
CCDC88B-210ENST00000494566 FAM218AQ96MZ4 157 aa11.7□□□□□ -0.54
CCDC88B-210ENST00000494566 SMIM1B2RUZ4 78 aa11.69□□□□□ -0.54
CCDC88B-210ENST00000494566 PFN2P35080 140 aa11.69□□□□□ -0.54
CCDC88B-210ENST00000494566 CLPSL2Q6UWE3 100 aa11.69□□□□□ -0.54
CCDC88B-210ENST00000494566 NSD1Q96L73 2696 aaPredicted RBP11.68□□□□□ -0.54
CCDC88B-210ENST00000494566 NDUFA1O15239 70 aa11.68□□□□□ -0.54
CCDC88B-210ENST00000494566 HILS1P60008 231 aa11.68□□□□□ -0.54
CCDC88B-210ENST00000494566 A0A096LPF7 62 aa11.68□□□□□ -0.54
CCDC88B-210ENST00000494566 UBE2L6O14933 153 aa11.67□□□□□ -0.54
CCDC88B-210ENST00000494566 CSNK1G2-AS1Q8NCQ2 148 aa11.67□□□□□ -0.54
CCDC88B-210ENST00000494566 ATP5G1P05496 136 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 TRGV4A0A0C4DH28 118 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 DEFB130BP0DP73 79 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 DEFB130AP0DP74 79 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 DAZ2Q13117 558 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 DAZ4Q86SG3 579 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 C5orf38Q86SI9 138 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 C16orf74Q96GX8 76 aa11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 DAZ3Q9NR90 486 aaKnown RBP11.66□□□□□ -0.54
CCDC88B-210ENST00000494566 PF4P02776 101 aa11.65□□□□□ -0.54
CCDC88B-210ENST00000494566 TRBV10-1A0A0K0K1A3 114 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 HERVK_113P63121 156 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 LINC00158P58513 81 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 MIR7-3HGQ8N6C7 128 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 SMCR5Q8TEV8 140 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 CDC42SE2Q9NRR3 84 aa11.64□□□□□ -0.55
CCDC88B-210ENST00000494566 BAALC-AS2P0C853 105 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 TIRAPP58753 221 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 SVIPQ8NHG7 77 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 HIVEP1P15822 2718 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 GAGE2AQ6NT46 116 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 IGLV5-45A0A087WSX0 123 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 H3BT86 120 aa11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 C9orf129Q5T035 196 aaKnown RBP11.63□□□□□ -0.55
CCDC88B-210ENST00000494566 IGLV4-60A0A075B6I1 120 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 FAM236AA0A1B0GUQ0 79 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 FAM236BA0A1B0GV22 79 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 LY6G6DO95868 133 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 SLPIP03973 132 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 TMEM243Q9BU79 118 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 SMIM20Q8N5G0 67 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 LINC00482Q8N8I6 264 aa11.62□□□□□ -0.55
CCDC88B-210ENST00000494566 OR13C6PQ8NH95 151 aa11.61□□□□□ -0.55
CCDC88B-210ENST00000494566 COX7A2LO14548 114 aa11.6□□□□□ -0.55
CCDC88B-210ENST00000494566 DEFB4AO15263 64 aa11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 FHL2Q14192 279 aa11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 IGLV5-39A0A0G2JS06 123 aa11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 LINC00337Q8N6G1 96 aa11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 TEP1Q99973 2627 aaKnown RBP11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 INAFM1C9JVW0 142 aa11.59□□□□□ -0.55
CCDC88B-210ENST00000494566 F5H768 121 aa11.58□□□□□ -0.56
CCDC88B-210ENST00000494566 A0A087WYN8 130 aa11.58□□□□□ -0.56
CCDC88B-210ENST00000494566 CMC4P56277 68 aaPredicted RBP11.58□□□□□ -0.56
CCDC88B-210ENST00000494566 OVOL2Q9BRP0 275 aa11.57□□□□□ -0.56
CCDC88B-210ENST00000494566 PRR3P79522 188 aaKnown RBP11.57□□□□□ -0.56
CCDC88B-210ENST00000494566 SND1-IT1Q9HBX3 110 aa11.57□□□□□ -0.56
CCDC88B-210ENST00000494566 TRBV6-4A0A1B0GX49 114 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 XCL1P47992 114 aa11.56□□□□□ -0.56
CCDC88B-210ENST00000494566 CSDC2Q9Y534 153 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms