RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 TRBV10-3A0A0K0K1G6 114 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 K7ERU9 68 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 M0R3E3 92 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 GSKIPQ9P0R6 139 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 FMN2Q9NZ56 1722 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 DOCK11Q5JSL3 2073 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 MRC2Q9UBG0 1479 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 ADAMTS12P58397 1594 aa-0.36□□□□□ -2.47
SCN1A-206ENST00000491429 MUC22E2RYF6 1773 aaPredicted RBP-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 APOC4-APOC2K7ER74 178 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 ARPC5O15511 151 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 MT1BP07438 61 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 SPINK8P0C7L1 97 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 SMIM6P0DI80 62 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 PIPP12273 146 aaPredicted RBP-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 MT1HP80294 61 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 DR1Q01658 176 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 LZICQ8WZA0 190 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 CNFNQ9BYD5 112 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 AKAP11Q9UKA4 1901 aa-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 KIAA0100Q14667 2235 aaKnown RBP-0.37□□□□□ -2.47
SCN1A-206ENST00000491429 SNCGO76070 127 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 TSPAN19P0C672 248 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 RRAS2P62070 204 aaPredicted RBP-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 SPTSSAQ969W0 71 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 NPVFQ9HCQ7 196 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 PI4KAP42356 2102 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 TIAM2Q8IVF5 1701 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 KIAA0586Q9BVV6 1533 aa-0.38□□□□□ -2.47
SCN1A-206ENST00000491429 ZNF831Q5JPB2 1677 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 ADGRL2O95490 1459 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 BCL9LQ86UU0 1499 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 PIN1P1O15428 100 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 CBLN1P23435 193 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 WFDC2Q14508 124 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 DEFB109BQ30KR1 87 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 BAGE3Q86Y29 109 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 TSTD1Q8NFU3 115 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 CHD1O14646 1710 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 KNDC1Q76NI1 1749 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 EHBP1L1Q8N3D4 1523 aa-0.39□□□□□ -2.47
SCN1A-206ENST00000491429 TMEM2Q9UHN6 1383 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 TRAV22A0A0B4J277 110 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 NCR2O95944 276 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 CFAP126Q5VTH2 177 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 ZNF818PQ6ZRF7 136 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 SCN3BQ9NY72 215 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 LINC00312Q9Y6C7 94 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 UBR3Q6ZT12 1888 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 RGPD8O14715 1765 aaPredicted RBP-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 RGPD5Q99666 1765 aa-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 PRG4Q92954 1404 aaPredicted RBP-0.4□□□□□ -2.47
SCN1A-206ENST00000491429 ARFGEF1Q9Y6D6 1849 aa-0.41□□□□□ -2.47
SCN1A-206ENST00000491429 NPFFO15130 113 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 HAMPP81172 84 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 Q5VV11 94 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 SEC11CQ9BY50 192 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 DAPK1P53355 1430 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 CDK5RAP2Q96SN8 1893 aa-0.41□□□□□ -2.48
SCN1A-206ENST00000491429 BIVM-ERCC5R4GMW8 1640 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 ZNF236Q9UL36 1845 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 M0R2T5 61 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 NDUFB6O95139 128 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 SCIMPQ6UWF3 145 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 TPT1P8Q9HAU6 139 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 ADGRB1O14514 1584 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 IQSEC2Q5JU85 1478 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 NESP48681 1621 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 MYH13Q9UKX3 1938 aa-0.42□□□□□ -2.48
SCN1A-206ENST00000491429 PARP14Q460N5 1801 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 ZC3H13Q5T200 1668 aaKnown RBP-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 ITSN1Q15811 1721 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 MT1HL1P0DM35 61 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 KCNRGQ8N5I3 272 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 COPZ2Q9P299 210 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 TMEM131LA2VDJ0 1609 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 WIZO95785 1651 aa-0.43□□□□□ -2.48
SCN1A-206ENST00000491429 FHAD1B1AJZ9 1412 aa-0.44□□□□□ -2.48
SCN1A-206ENST00000491429 GUCA1AP43080 201 aaPredicted RBP-0.44□□□□□ -2.48
SCN1A-206ENST00000491429 COPZ1P61923 177 aa-0.44□□□□□ -2.48
SCN1A-206ENST00000491429 DEFB123Q8N688 67 aa-0.44□□□□□ -2.48
SCN1A-206ENST00000491429 IFT172Q9UG01 1749 aa-0.44□□□□□ -2.48
SCN1A-206ENST00000491429 SIPA1L3O60292 1781 aaPredicted RBP-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 SMG6Q86US8 1419 aaKnown RBP-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 CASKIN1Q8WXD9 1431 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 SHANK2Q9UPX8 1470 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 PPP1R17O96001 155 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 MT2AP02795 61 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 MT1FP04733 61 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 CCL8P80075 99 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 SPAG11BQ08648 103 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 Q8IZM0 81 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 MT1MQ8N339 61 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 MAFIPQ8WZ33 124 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 SPCS1Q9Y6A9 102 aa-0.45□□□□□ -2.48
SCN1A-206ENST00000491429 LRRC37A2A6NM11 1700 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 DNAJC13O75165 2243 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 PAPPA2Q9BXP8 1791 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 CLASP1Q7Z460 1538 aa-0.46□□□□□ -2.48
SCN1A-206ENST00000491429 BCE1O60756 84 aa-0.46□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms