RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 SLC25A34Q6PIV7 304 aa14.68□□□□□ -0.06
SMC4-221ENST00000489573 SIVA1O15304 175 aa14.67□□□□□ -0.06
SMC4-221ENST00000489573 CRPP02741 224 aa14.67□□□□□ -0.06
SMC4-221ENST00000489573 PCP2Q8IVA1 136 aa14.67□□□□□ -0.06
SMC4-221ENST00000489573 SPINK8P0C7L1 97 aa14.66□□□□□ -0.06
SMC4-221ENST00000489573 IGHV3-64A0A075B6Q5 118 aa14.65□□□□□ -0.06
SMC4-221ENST00000489573 LEPROTO15243 131 aa14.65□□□□□ -0.06
SMC4-221ENST00000489573 XCL1P47992 114 aa14.65□□□□□ -0.06
SMC4-221ENST00000489573 ENHOQ6UWT2 76 aa14.65□□□□□ -0.06
SMC4-221ENST00000489573 UBE2WQ96B02 151 aa14.65□□□□□ -0.06
SMC4-221ENST00000489573 IGHV3OR16-9A0A0B4J2B5 98 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 IGHV1-58A0A0C4DH39 117 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 DDTP30046 118 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 BOD1L2Q8IYS8 172 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 CHCHD10Q8WYQ3 142 aaPredicted RBP14.64□□□□□ -0.07
SMC4-221ENST00000489573 TP73-AS1Q9UF72 201 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 TRAV8-3A0A0A6YYJ7 113 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 ZFAND6Q6FIF0 208 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 UBE2DNLQ8IWF7 75 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 PLEKHB2Q96CS7 222 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 TTTY13Q9BZ97 58 aa14.64□□□□□ -0.07
SMC4-221ENST00000489573 IGLV10-54A0A075B6I4 117 aa14.63□□□□□ -0.07
SMC4-221ENST00000489573 DLEU1O43261 78 aa14.63□□□□□ -0.07
SMC4-221ENST00000489573 SMIM1B2RUZ4 78 aa14.62□□□□□ -0.07
SMC4-221ENST00000489573 J3QQQ9 107 aa14.62□□□□□ -0.07
SMC4-221ENST00000489573 TSPEAR-AS2P59090 65 aa14.62□□□□□ -0.07
SMC4-221ENST00000489573 CD164L2Q6UWJ8 174 aa14.62□□□□□ -0.07
SMC4-221ENST00000489573 A0A087WZ39 114 aa14.61□□□□□ -0.07
SMC4-221ENST00000489573 TRAV8-4A0A0B4J246 113 aa14.61□□□□□ -0.07
SMC4-221ENST00000489573 LGALS3P17931 250 aaKnown RBP14.61□□□□□ -0.07
SMC4-221ENST00000489573 MIAQ16674 131 aa14.61□□□□□ -0.07
SMC4-221ENST00000489573 MUC7Q8TAX7 377 aa14.61□□□□□ -0.07
SMC4-221ENST00000489573 C5orf38Q86SI9 138 aa14.6□□□□□ -0.07
SMC4-221ENST00000489573 MAPKAPK5-AS1Q8N8E1 139 aa14.6□□□□□ -0.07
SMC4-221ENST00000489573 IGLV5-39A0A0G2JS06 123 aa14.6□□□□□ -0.07
SMC4-221ENST00000489573 HNRNPA3P51991 378 aaKnown RBP14.6□□□□□ -0.07
SMC4-221ENST00000489573 Q9H8V8 135 aa14.6□□□□□ -0.07
SMC4-221ENST00000489573 MYMXA0A1B0GTQ4 84 aa14.59□□□□□ -0.07
SMC4-221ENST00000489573 WWC2-AS2Q96NR7 200 aa14.59□□□□□ -0.07
SMC4-221ENST00000489573 ZNF815PA8K554 130 aa14.58□□□□□ -0.08
SMC4-221ENST00000489573 DYNC2H1Q8NCM8 4307 aaKnown RBP14.58□□□□□ -0.08
SMC4-221ENST00000489573 GAGE12HA6NDE8 117 aa14.57□□□□□ -0.08
SMC4-221ENST00000489573 FOXI1Q12951 378 aa14.57□□□□□ -0.08
SMC4-221ENST00000489573 LINC01561Q8N1V8 128 aa14.57□□□□□ -0.08
SMC4-221ENST00000489573 C10orf126Q8N4M7 172 aa14.57□□□□□ -0.08
SMC4-221ENST00000489573 COX7A2LO14548 114 aa14.56□□□□□ -0.08
SMC4-221ENST00000489573 IBA57-AS1B1ANH7 110 aa14.55□□□□□ -0.08
SMC4-221ENST00000489573 C2orf91Q6ZV80 131 aa14.55□□□□□ -0.08
SMC4-221ENST00000489573 K7EP13 123 aa14.53□□□□□ -0.08
SMC4-221ENST00000489573 C1orf43Q9BWL3 253 aa14.53□□□□□ -0.08
SMC4-221ENST00000489573 LINC00587B1AMM8 73 aa14.52□□□□□ -0.08
SMC4-221ENST00000489573 NDUFA12Q9UI09 145 aa14.52□□□□□ -0.08
SMC4-221ENST00000489573 MALP21145 153 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 COX7B2Q8TF08 81 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 Q9HAA7 133 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 CTAG1AP78358 180 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 KRTAP26-1Q6PEX3 210 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 HIGD1BQ9P298 99 aa14.51□□□□□ -0.09
SMC4-221ENST00000489573 SCGB1D4Q6XE38 83 aa14.5□□□□□ -0.09
SMC4-221ENST00000489573 TOMM7Q9P0U1 55 aa14.5□□□□□ -0.09
SMC4-221ENST00000489573 DNAH7Q8WXX0 4024 aa14.5□□□□□ -0.09
SMC4-221ENST00000489573 IGKV2D-24A0A075B6R9 120 aa14.49□□□□□ -0.09
SMC4-221ENST00000489573 NDUFA1O15239 70 aa14.49□□□□□ -0.09
SMC4-221ENST00000489573 APOMO95445 188 aa14.47□□□□□ -0.09
SMC4-221ENST00000489573 ORAOV1Q8WV07 137 aa14.47□□□□□ -0.09
SMC4-221ENST00000489573 RMI2Q96E14 147 aa14.47□□□□□ -0.09
SMC4-221ENST00000489573 Q8IZM0 81 aa14.47□□□□□ -0.09
SMC4-221ENST00000489573 KMT2CQ8NEZ4 4911 aaKnown RBP14.46□□□□□ -0.1
SMC4-221ENST00000489573 PRSS2P07478 247 aa14.45□□□□□ -0.1
SMC4-221ENST00000489573 ZNF625Q96I27 306 aaPredicted RBP14.45□□□□□ -0.1
SMC4-221ENST00000489573 KRTAP1-5Q9BYS1 174 aa14.45□□□□□ -0.1
SMC4-221ENST00000489573 A0A0J9YXY3 114 aa14.44□□□□□ -0.1
SMC4-221ENST00000489573 CSMD3Q7Z407 3707 aa14.44□□□□□ -0.1
SMC4-221ENST00000489573 C6orf226Q5I0X4 101 aa14.43□□□□□ -0.1
SMC4-221ENST00000489573 TTC32Q5I0X7 151 aa14.43□□□□□ -0.1
SMC4-221ENST00000489573 HERV-K104P63124 156 aa14.43□□□□□ -0.1
SMC4-221ENST00000489573 CASC10Q5T4H9 136 aa14.43□□□□□ -0.1
SMC4-221ENST00000489573 STARD9Q9P2P6 4700 aa14.42□□□□□ -0.1
SMC4-221ENST00000489573 C3orf84H3BNL1 204 aa14.42□□□□□ -0.1
SMC4-221ENST00000489573 HSD52Q0P140 79 aa14.42□□□□□ -0.1
SMC4-221ENST00000489573 KIAA0087Q14695 138 aa14.42□□□□□ -0.1
SMC4-221ENST00000489573 CFAP161Q6P656 301 aa14.42□□□□□ -0.1
SMC4-221ENST00000489573 NBDYA0A0U1RRE5 68 aa14.41□□□□□ -0.1
SMC4-221ENST00000489573 SPAG11BQ08648 103 aa14.41□□□□□ -0.1
SMC4-221ENST00000489573 SFTA2Q6UW10 78 aa14.41□□□□□ -0.1
SMC4-221ENST00000489573 PLECQ15149 4684 aaKnown RBP14.41□□□□□ -0.1
SMC4-221ENST00000489573 COX11Q9Y6N1 276 aa14.4□□□□□ -0.1
SMC4-221ENST00000489573 CXCL5P42830 114 aa14.39□□□□□ -0.11
SMC4-221ENST00000489573 TMEM238C9JI98 176 aa14.39□□□□□ -0.11
SMC4-221ENST00000489573 SPANXB1Q9NS25 103 aaPredicted RBP14.39□□□□□ -0.11
SMC4-221ENST00000489573 HINT1P49773 126 aaPredicted RBP14.38□□□□□ -0.11
SMC4-221ENST00000489573 CKS1BP61024 79 aa14.38□□□□□ -0.11
SMC4-221ENST00000489573 TAL2Q16559 108 aa14.38□□□□□ -0.11
SMC4-221ENST00000489573 HIST1H4GQ99525 98 aa14.38□□□□□ -0.11
SMC4-221ENST00000489573 M0R143 59 aa14.37□□□□□ -0.11
SMC4-221ENST00000489573 TIMM17BO60830 172 aa14.37□□□□□ -0.11
SMC4-221ENST00000489573 C15orf56Q8N910 161 aa14.37□□□□□ -0.11
SMC4-221ENST00000489573 TM2D2Q9BX73 214 aa14.37□□□□□ -0.11
SMC4-221ENST00000489573 SRSF9Q13242 221 aaKnown RBP eCLIP14.36□□□□□ -0.11
SMC4-221ENST00000489573 MEIG1Q5JSS6 88 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms