RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 CRYGAP11844 174 aa9.43□□□□□ -0.9
USP48-210ENST00000489108 TIMM21Q9BVV7 248 aa9.43□□□□□ -0.9
USP48-210ENST00000489108 TMEM191AQ9H0A3 160 aa9.43□□□□□ -0.9
USP48-210ENST00000489108 TEX46H3BTG2 121 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 KIAA0087Q14695 138 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 TPRXLQ17RH7 258 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 AMN1Q8IY45 258 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 FAM104AQ969W3 186 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 CTDSP1Q9GZU7 261 aa9.42□□□□□ -0.9
USP48-210ENST00000489108 NUPR1O60356 82 aa9.41□□□□□ -0.9
USP48-210ENST00000489108 BORCS7Q96B45 105 aa9.41□□□□□ -0.9
USP48-210ENST00000489108 KIR2DL4Q99706 377 aa9.41□□□□□ -0.9
USP48-210ENST00000489108 ANAPC11Q9NYG5 84 aa9.41□□□□□ -0.9
USP48-210ENST00000489108 IGLV7-46A0A075B6I9 117 aa9.4□□□□□ -0.9
USP48-210ENST00000489108 HMSDA8MTL9 139 aa9.4□□□□□ -0.9
USP48-210ENST00000489108 NDUFC2-KCTD14E9PQ53 114 aa9.4□□□□□ -0.9
USP48-210ENST00000489108 SUMO2P61956 95 aaKnown RBP9.4□□□□□ -0.9
USP48-210ENST00000489108 NRACQ8N912 160 aa9.4□□□□□ -0.9
USP48-210ENST00000489108 TMEM18Q96B42 140 aa9.4□□□□□ -0.9
USP48-210ENST00000489108 A0A1B0GUT8 65 aa9.39□□□□□ -0.91
USP48-210ENST00000489108 RPL39P62891 51 aaKnown RBP9.39□□□□□ -0.91
USP48-210ENST00000489108 C2orf82Q6UX34 121 aa9.39□□□□□ -0.91
USP48-210ENST00000489108 C22orf24Q9Y442 160 aa9.39□□□□□ -0.91
USP48-210ENST00000489108 TRBV30A0A0K0K1B3 111 aa9.38□□□□□ -0.91
USP48-210ENST00000489108 KRTAP13-2Q52LG2 175 aa9.38□□□□□ -0.91
USP48-210ENST00000489108 FAM231DQ6ZW35 169 aa9.38□□□□□ -0.91
USP48-210ENST00000489108 RPL28P46779 137 aaKnown RBP9.37□□□□□ -0.91
USP48-210ENST00000489108 HIGD1CA8MV81 97 aa9.36□□□□□ -0.91
USP48-210ENST00000489108 PPP1R17O96001 155 aa9.36□□□□□ -0.91
USP48-210ENST00000489108 LINC01547P58512 204 aaPredicted RBP9.36□□□□□ -0.91
USP48-210ENST00000489108 LINC00173Q6ZV60 143 aa9.36□□□□□ -0.91
USP48-210ENST00000489108 PACRGQ96M98 296 aaPredicted RBP9.36□□□□□ -0.91
USP48-210ENST00000489108 IFITM10A6NMD0 228 aa9.35□□□□□ -0.91
USP48-210ENST00000489108 CT83Q5H943 113 aa9.35□□□□□ -0.91
USP48-210ENST00000489108 LINC00469Q8N7U9 141 aa9.35□□□□□ -0.91
USP48-210ENST00000489108 LINC00304Q8N9R0 145 aa9.35□□□□□ -0.91
USP48-210ENST00000489108 TGIF2-C20orf24A0A0A6YYL0 155 aa9.34□□□□□ -0.91
USP48-210ENST00000489108 BCE1O60756 84 aa9.34□□□□□ -0.91
USP48-210ENST00000489108 LBHQ53QV2 105 aaPredicted RBP9.34□□□□□ -0.91
USP48-210ENST00000489108 LINC00242Q5T6M2 205 aa9.34□□□□□ -0.91
USP48-210ENST00000489108 PPP1R2P9O14990 202 aa9.33□□□□□ -0.92
USP48-210ENST00000489108 HBBP68871 147 aa9.33□□□□□ -0.92
USP48-210ENST00000489108 MRPS36P82909 103 aaKnown RBP9.33□□□□□ -0.92
USP48-210ENST00000489108 ZNF727A8MUV8 499 aa9.32□□□□□ -0.92
USP48-210ENST00000489108 TAGLN2P37802 199 aaKnown RBP9.32□□□□□ -0.92
USP48-210ENST00000489108 PPDPFQ9H3Y8 114 aa9.32□□□□□ -0.92
USP48-210ENST00000489108 XAGE1AQ9HD64 81 aa9.32□□□□□ -0.92
USP48-210ENST00000489108 SPANXA1Q9NS26 97 aa9.32□□□□□ -0.92
USP48-210ENST00000489108 MRPL51Q4U2R6 128 aaKnown RBP9.31□□□□□ -0.92
USP48-210ENST00000489108 RIGQ13278 110 aa9.3□□□□□ -0.92
USP48-210ENST00000489108 MRPL55Q7Z7F7 128 aaKnown RBP9.29□□□□□ -0.92
USP48-210ENST00000489108 C20orf78Q9BR46 151 aa9.29□□□□□ -0.92
USP48-210ENST00000489108 TCAPO15273 167 aa9.28□□□□□ -0.92
USP48-210ENST00000489108 SRSF3P84103 164 aaKnown RBP9.28□□□□□ -0.92
USP48-210ENST00000489108 TP73-AS1Q9UF72 201 aa9.28□□□□□ -0.92
USP48-210ENST00000489108 TRBV24-1A0A075B6N3 115 aa9.27□□□□□ -0.93
USP48-210ENST00000489108 RPL37AP8A6NKH3 93 aa9.27□□□□□ -0.93
USP48-210ENST00000489108 RPL32P62910 135 aaKnown RBP9.27□□□□□ -0.93
USP48-210ENST00000489108 FAM229BQ4G0N7 80 aa9.27□□□□□ -0.93
USP48-210ENST00000489108 FAM104BQ5XKR9 115 aa9.27□□□□□ -0.93
USP48-210ENST00000489108 KRTAP4-1Q9BYQ7 146 aa9.27□□□□□ -0.93
USP48-210ENST00000489108 TMEM250H0YL14 139 aa9.26□□□□□ -0.93
USP48-210ENST00000489108 CEBPGP53567 150 aa9.26□□□□□ -0.93
USP48-210ENST00000489108 LINC00167Q96N53 147 aa9.26□□□□□ -0.93
USP48-210ENST00000489108 IGKV2D-26A0A0A0MRZ7 120 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 LINC00862A6NCI5 91 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 TNFRSF6BO95407 300 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 CKS2P33552 79 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 CKS1BP61024 79 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 SMIM2Q9BVW6 85 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 OSTCQ9NRP0 149 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 TOMM7Q9P0U1 55 aa9.25□□□□□ -0.93
USP48-210ENST00000489108 PRSS2P07478 247 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 ASB16-AS1Q495Z4 193 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 C6orf226Q5I0X4 101 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 LINC01551Q86U37 167 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 KRTAP13-1Q8IUC0 172 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 LINC01561Q8N1V8 128 aa9.24□□□□□ -0.93
USP48-210ENST00000489108 IGLV4-3A0A075B6K6 122 aa9.23□□□□□ -0.93
USP48-210ENST00000489108 CTAG1AP78358 180 aa9.23□□□□□ -0.93
USP48-210ENST00000489108 RGS21Q2M5E4 152 aa9.23□□□□□ -0.93
USP48-210ENST00000489108 GAGE10A6NGK3 116 aa9.22□□□□□ -0.93
USP48-210ENST00000489108 IFI27P40305 119 aaPredicted RBP9.22□□□□□ -0.93
USP48-210ENST00000489108 UBE2AP49459 152 aa9.22□□□□□ -0.93
USP48-210ENST00000489108 LINC00337Q8N6G1 96 aa9.22□□□□□ -0.93
USP48-210ENST00000489108 V9GYV3 84 aa9.22□□□□□ -0.93
USP48-210ENST00000489108 Q6ZN92 141 aa9.21□□□□□ -0.94
USP48-210ENST00000489108 PYGO1Q9Y3Y4 419 aa9.21□□□□□ -0.94
USP48-210ENST00000489108 NPYP01303 97 aa9.2□□□□□ -0.94
USP48-210ENST00000489108 ZC2HC1BQ5TFG8 222 aa9.2□□□□□ -0.94
USP48-210ENST00000489108 TMEM141Q96I45 108 aa9.2□□□□□ -0.94
USP48-210ENST00000489108 SMIM7Q9BQ49 75 aa9.2□□□□□ -0.94
USP48-210ENST00000489108 ALKBH7Q9BT30 221 aaPredicted RBP9.2□□□□□ -0.94
USP48-210ENST00000489108 D6R8Y8 96 aa9.19□□□□□ -0.94
USP48-210ENST00000489108 Q8IZM0 81 aa9.19□□□□□ -0.94
USP48-210ENST00000489108 EIF5A2Q9GZV4 153 aaKnown RBP9.19□□□□□ -0.94
USP48-210ENST00000489108 NAT8BQ9UHF3 227 aa9.19□□□□□ -0.94
USP48-210ENST00000489108 KRTAP13-3Q3SY46 172 aa9.18□□□□□ -0.94
USP48-210ENST00000489108 TEX43Q6ZNM6 134 aa9.18□□□□□ -0.94
USP48-210ENST00000489108 RAB5AP20339 215 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms