RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 HIST1H2BNQ99877 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 HIST1H2BMQ99879 126 aa6.88□□□□□ -1.31
SKA1-204ENST00000488454 OPRPNQ99935 248 aaPredicted RBP6.88□□□□□ -1.31
SKA1-204ENST00000488454 TRAV13-1A0A0B4J241 112 aa6.87□□□□□ -1.31
SKA1-204ENST00000488454 IFITM10A6NMD0 228 aa6.87□□□□□ -1.31
SKA1-204ENST00000488454 RTL8CO15255 209 aa6.87□□□□□ -1.31
SKA1-204ENST00000488454 ATP5LO75964 103 aa6.87□□□□□ -1.31
SKA1-204ENST00000488454 PRSS29PA6NIE9 313 aa6.86□□□□□ -1.31
SKA1-204ENST00000488454 XCL1P47992 114 aa6.86□□□□□ -1.31
SKA1-204ENST00000488454 NDUFA6P56556 154 aa6.86□□□□□ -1.31
SKA1-204ENST00000488454 Q6ZRN7 208 aaPredicted RBP6.86□□□□□ -1.31
SKA1-204ENST00000488454 CHCHD10Q8WYQ3 142 aaPredicted RBP6.86□□□□□ -1.31
SKA1-204ENST00000488454 GAGE12HA6NDE8 117 aa6.85□□□□□ -1.31
SKA1-204ENST00000488454 FAM19A2Q8N3H0 131 aa6.85□□□□□ -1.31
SKA1-204ENST00000488454 DNAH2Q9P225 4427 aa6.85□□□□□ -1.31
SKA1-204ENST00000488454 A0A096LNJ9 63 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 LEPROTL1O95214 131 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 PRSS1P07477 247 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 SEC11AP67812 179 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 PMVKQ15126 192 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 PDZD11Q5EBL8 140 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 CFAP161Q6P656 301 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 CD164L2Q6UWJ8 174 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 BAALCQ8WXS3 180 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 FAM104AQ969W3 186 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 AMELXQ99217 191 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 HSPB8Q9UJY1 196 aa6.84□□□□□ -1.31
SKA1-204ENST00000488454 NUPR1O60356 82 aa6.83□□□□□ -1.32
SKA1-204ENST00000488454 ZC2HC1BQ5TFG8 222 aa6.83□□□□□ -1.32
SKA1-204ENST00000488454 IFI27L1Q96BM0 104 aa6.83□□□□□ -1.32
SKA1-204ENST00000488454 CST9LQ9H4G1 147 aa6.83□□□□□ -1.32
SKA1-204ENST00000488454 RYR1P21817 5038 aa6.83□□□□□ -1.32
SKA1-204ENST00000488454 A0A087WTM6 91 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 COX7A2LO14548 114 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 LECT2O14960 151 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 S100A6P06703 90 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 FABP4P15090 132 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 MALP21145 153 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 UBE2D1P51668 147 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 KRTAP10-2P60368 255 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 FOXI1Q12951 378 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 C14orf177Q52M58 125 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 KRTAP26-1Q6PEX3 210 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 MAPKAPK5-AS1Q8N8E1 139 aa6.82□□□□□ -1.32
SKA1-204ENST00000488454 PCLOQ9Y6V0 5065 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 COA6Q5JTJ3 125 aaKnown RBP6.81□□□□□ -1.32
SKA1-204ENST00000488454 LINC00242Q5T6M2 205 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 LINC00173Q6ZV60 143 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 KRTAP9-3Q9BYQ3 159 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 GEMIN7Q9H840 131 aaKnown RBP6.81□□□□□ -1.32
SKA1-204ENST00000488454 DNAH17Q9UFH2 4485 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 DNAH10Q8IVF4 4471 aa6.81□□□□□ -1.32
SKA1-204ENST00000488454 LRCOL1A6NCL2 159 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 USP17L23D6RBM5 183 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 APOMO95445 188 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 HERVK_113P63121 156 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 C5orf38Q86SI9 138 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 MAP1LC3CQ9BXW4 147 aa6.8□□□□□ -1.32
SKA1-204ENST00000488454 IGHV1-58A0A0C4DH39 117 aa6.79□□□□□ -1.32
SKA1-204ENST00000488454 A0A0J9YXV3 536 aa6.79□□□□□ -1.32
SKA1-204ENST00000488454 Q8N814 137 aa6.79□□□□□ -1.32
SKA1-204ENST00000488454 PACRGQ96M98 296 aaPredicted RBP6.79□□□□□ -1.32
SKA1-204ENST00000488454 TRAV12-1A0A0B4J245 112 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 IGHV3OR16-9A0A0B4J2B5 98 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 TINCRA0A1B0GVN0 87 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 hDV102S1A0JD36 115 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 H0Y8G0 127 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 S100A2P29034 98 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 COX6A2Q02221 97 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 FAM19A3Q7Z5A8 133 aa6.78□□□□□ -1.32
SKA1-204ENST00000488454 CHTOPQ9Y3Y2 248 aaKnown RBP6.78□□□□□ -1.32
SKA1-204ENST00000488454 A0A087WZ39 114 aa6.77□□□□□ -1.33
SKA1-204ENST00000488454 WFDC2Q14508 124 aa6.77□□□□□ -1.33
SKA1-204ENST00000488454 LCE5AQ5TCM9 118 aa6.77□□□□□ -1.33
SKA1-204ENST00000488454 LINC00469Q8N7U9 141 aa6.77□□□□□ -1.33
SKA1-204ENST00000488454 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.76□□□□□ -1.33
SKA1-204ENST00000488454 H3BRM9 83 aa6.76□□□□□ -1.33
SKA1-204ENST00000488454 HIGD2BQ4VC39 106 aa6.76□□□□□ -1.33
SKA1-204ENST00000488454 SPATA12Q7Z6I5 190 aa6.76□□□□□ -1.33
SKA1-204ENST00000488454 LINC01561Q8N1V8 128 aa6.76□□□□□ -1.33
SKA1-204ENST00000488454 NTN5Q8WTR8 489 aaPredicted RBP6.76□□□□□ -1.33
SKA1-204ENST00000488454 IGHV3-64A0A075B6Q5 118 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 IGLV5-52A0A0A0MRZ9 124 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 F8VRH5 84 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 IGLC3P0DOY3 106 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 C15orf56Q8N910 161 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 ORAOV1Q8WV07 137 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 CHAC1Q9BUX1 264 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 CDKN2A-AS1Q9UH64 79 aa6.75□□□□□ -1.33
SKA1-204ENST00000488454 FRAS1Q86XX4 4008 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 FAT2Q9NYQ8 4349 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 GVQW2A0A096LPI5 108 aaPredicted RBP6.74□□□□□ -1.33
SKA1-204ENST00000488454 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.74□□□□□ -1.33
SKA1-204ENST00000488454 A0A1B0GVY2 172 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 PRSS2P07478 247 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 SNRPEP62304 92 aaKnown RBP6.74□□□□□ -1.33
SKA1-204ENST00000488454 TMEM170BQ5T4T1 132 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 OR10D4PQ8NGN7 298 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 KRTAP3-1Q9BYR8 98 aa6.74□□□□□ -1.33
SKA1-204ENST00000488454 MRPL35Q9NZE8 188 aaKnown RBP6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms