RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 SEC11AP67812 179 aa10.32□□□□□ -0.76
C9orf3-219ENST00000488186 HIGD2BQ4VC39 106 aa10.31□□□□□ -0.76
C9orf3-219ENST00000488186 LINC00173Q6ZV60 143 aa10.31□□□□□ -0.76
C9orf3-219ENST00000488186 GEMIN7Q9H840 131 aaKnown RBP10.31□□□□□ -0.76
C9orf3-219ENST00000488186 A0A096LNJ9 63 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 ZNF561-AS1K7EIQ3 104 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 SERF1AO75920 110 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 PMVKQ15126 192 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 PDZD11Q5EBL8 140 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 LINC00242Q5T6M2 205 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 FAM19A2Q8N3H0 131 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 CST9LQ9H4G1 147 aa10.3□□□□□ -0.76
C9orf3-219ENST00000488186 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.29□□□□□ -0.76
C9orf3-219ENST00000488186 C15orf56Q8N910 161 aa10.29□□□□□ -0.76
C9orf3-219ENST00000488186 LRP1BQ9NZR2 4599 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 DNAH5Q8TE73 4624 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 IGHV3OR16-9A0A0B4J2B5 98 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BKO60814 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BJP06899 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BOP23527 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BBP33778 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BDP58876 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BCP62807 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HERVK_113P63121 156 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST2H2BEQ16778 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BHQ93079 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BNQ99877 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 HIST1H2BMQ99879 126 aa10.28□□□□□ -0.76
C9orf3-219ENST00000488186 A0A0J9YXV3 536 aa10.27□□□□□ -0.77
C9orf3-219ENST00000488186 COX6A2Q02221 97 aa10.27□□□□□ -0.77
C9orf3-219ENST00000488186 GVQW2A0A096LPI5 108 aaPredicted RBP10.26□□□□□ -0.77
C9orf3-219ENST00000488186 LEPROTL1O95214 131 aa10.26□□□□□ -0.77
C9orf3-219ENST00000488186 IFI27L1Q96BM0 104 aa10.26□□□□□ -0.77
C9orf3-219ENST00000488186 A0A087WZ39 114 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 TINCRA0A1B0GVN0 87 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 FAM19A3Q7Z5A8 133 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 LINC00469Q8N7U9 141 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 OR10D4PQ8NGN7 298 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 ORAOV1Q8WV07 137 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 PACRGQ96M98 296 aaPredicted RBP10.25□□□□□ -0.77
C9orf3-219ENST00000488186 HSPB8Q9UJY1 196 aa10.25□□□□□ -0.77
C9orf3-219ENST00000488186 IGHV3-64A0A075B6Q5 118 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 NUPR1O60356 82 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 CDK2AP2O75956 126 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 FABP4P15090 132 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 CNBPP62633 177 aaKnown RBP10.24□□□□□ -0.77
C9orf3-219ENST00000488186 SPAG11BQ08648 103 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 LINC00526Q96FQ7 95 aa10.24□□□□□ -0.77
C9orf3-219ENST00000488186 KIAA1109Q2LD37 5005 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 IGLV4-69A0A075B6H9 119 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 LINC00310P59036 64 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 KRTAP10-1P60331 282 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 LINC01620Q4KN68 170 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 LINC01561Q8N1V8 128 aa10.23□□□□□ -0.77
C9orf3-219ENST00000488186 H0Y8G0 127 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 H3BRM9 83 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 PRSS2P07478 247 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 C9orf163Q8N9P6 203 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 CAMK2N2Q96S95 79 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 CDKN2A-AS1Q9UH64 79 aa10.22□□□□□ -0.77
C9orf3-219ENST00000488186 CHTOPQ9Y3Y2 248 aaKnown RBP10.22□□□□□ -0.77
C9orf3-219ENST00000488186 SYCNQ0VAF6 134 aa10.21□□□□□ -0.77
C9orf3-219ENST00000488186 TRAV12-1A0A0B4J245 112 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 SLPIP03973 132 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 C2orf48Q96LS8 159 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 CARD19Q96LW7 228 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 CHAC1Q9BUX1 264 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 TOMM7Q9P0U1 55 aa10.2□□□□□ -0.78
C9orf3-219ENST00000488186 IGLC3P0DOY3 106 aa10.19□□□□□ -0.78
C9orf3-219ENST00000488186 C6orf226Q5I0X4 101 aa10.19□□□□□ -0.78
C9orf3-219ENST00000488186 F8WDY8 70 aa10.18□□□□□ -0.78
C9orf3-219ENST00000488186 NDUFA1O15239 70 aa10.18□□□□□ -0.78
C9orf3-219ENST00000488186 DPH3Q96FX2 82 aa10.18□□□□□ -0.78
C9orf3-219ENST00000488186 MAP1LC3CQ9BXW4 147 aa10.18□□□□□ -0.78
C9orf3-219ENST00000488186 PKIGQ9Y2B9 76 aa10.18□□□□□ -0.78
C9orf3-219ENST00000488186 CKS1BP61024 79 aa10.17□□□□□ -0.78
C9orf3-219ENST00000488186 TMEM170BQ5T4T1 132 aa10.17□□□□□ -0.78
C9orf3-219ENST00000488186 HERC2O95714 4834 aa10.17□□□□□ -0.78
C9orf3-219ENST00000488186 APOBP04114 4563 aaKnown RBP10.16□□□□□ -0.78
C9orf3-219ENST00000488186 IGLV5-45A0A087WSX0 123 aa10.16□□□□□ -0.78
C9orf3-219ENST00000488186 SPINK8P0C7L1 97 aa10.16□□□□□ -0.78
C9orf3-219ENST00000488186 COA6Q5JTJ3 125 aaKnown RBP10.16□□□□□ -0.78
C9orf3-219ENST00000488186 Q6ZRU5 148 aa10.16□□□□□ -0.78
C9orf3-219ENST00000488186 F8VRH5 84 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 S100A6P06703 90 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 SDIM1Q6ZPB5 146 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 Q8IZM0 81 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 MRPL35Q9NZE8 188 aaKnown RBP10.15□□□□□ -0.78
C9orf3-219ENST00000488186 RYR1P21817 5038 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 HSPG2P98160 4391 aa10.15□□□□□ -0.78
C9orf3-219ENST00000488186 C11orf86A6NJI1 115 aa10.14□□□□□ -0.79
C9orf3-219ENST00000488186 SMIM1B2RUZ4 78 aa10.14□□□□□ -0.79
C9orf3-219ENST00000488186 ZNF22P17026 224 aaPredicted RBP10.14□□□□□ -0.79
C9orf3-219ENST00000488186 KIAA0087Q14695 138 aa10.13□□□□□ -0.79
C9orf3-219ENST00000488186 UNQ6190/PRO20217Q6UXQ8 127 aa10.13□□□□□ -0.79
C9orf3-219ENST00000488186 COX7B2Q8TF08 81 aa10.13□□□□□ -0.79
C9orf3-219ENST00000488186 FAM30AQ9NZY2 134 aa10.13□□□□□ -0.79
C9orf3-219ENST00000488186 LOC107984640A0A0U1RRK4 108 aa10.12□□□□□ -0.79
C9orf3-219ENST00000488186 ODF1Q14990 250 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms