RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SBSPONQ8IVN8 264 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 Q8N8P6 123 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 TSKUQ8WUA8 353 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 Q96M85 177 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 LINC00052Q96N35 136 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 SLC50A1Q9BRV3 221 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 KRTAP4-1Q9BYQ7 146 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 NPVFQ9HCQ7 196 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 C14orf132Q9NPU4 83 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 SCN8AQ9UQD0 1980 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 HHLA3Q9XRX5 114 aa1.53□□□□□ -2.16
VPS41-213ENST00000485955 DNAH3Q8TD57 4116 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 TNRC6AQ8NDV7 1962 aaKnown RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 MYH6P13533 1939 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 ANK1P16157 1881 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 IGKV1D-42A0A075B6H8 117 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 IGHV3OR16-8A0A075B7F1 116 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 UBE2L5PA0A1B0GUS4 154 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 ZNF705FA8MVS1 300 aaPredicted RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 H3BQ15 152 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 PROSCO94903 275 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 UBL3O95164 117 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 CRPP02741 224 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 PIPP12273 146 aaPredicted RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 SNCAP37840 140 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 UBE2L3P68036 154 aaKnown RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 DCDP81605 110 aaKnown RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 SPANXN5Q5MJ07 72 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 SPANXN1Q5VSR9 72 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 UNQ5815/PRO19632Q6UWF5 114 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 ZNF720Q7Z2F6 126 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 C5orf38Q86SI9 138 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 FAM19A2Q8N3H0 131 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 KLF14Q8TD94 323 aaPredicted RBP1.52□□□□□ -2.17
VPS41-213ENST00000485955 C10orf82Q8WW14 230 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 MUCL1Q96DR8 90 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 SMIM7Q9BQ49 75 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 CACNA1CQ13936 2221 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 EML6Q6ZMW3 1958 aa1.52□□□□□ -2.17
VPS41-213ENST00000485955 DNAH9Q9NYC9 4486 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 CHD3Q12873 2000 aaKnown RBP1.51□□□□□ -2.17
VPS41-213ENST00000485955 MYH8P13535 1937 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 TRAV1-1A0A0B4J248 108 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 IGHV1-18A0A0C4DH31 117 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 GNGT2O14610 69 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 GYPAP02724 150 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 NMBP08949 121 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 PIRTP0C851 137 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 MGST1P10620 155 aaKnown RBP1.51□□□□□ -2.17
VPS41-213ENST00000485955 ADCYAP1P18509 176 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 ASIPP42127 132 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 RPL26P61254 145 aaKnown RBP1.51□□□□□ -2.17
VPS41-213ENST00000485955 INSL4Q14641 139 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 C1orf134Q5TEV5 83 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 CASC2Q6XLA1 102 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 ZNF826PQ6ZT77 177 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 ARPINQ7Z6K5 226 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 LINC00269Q8N2A0 174 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 S100A13Q99584 98 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 PMCHL2Q9BQD1 86 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 DPH3P1Q9H4G8 78 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 MINOS1-NBL1R4GNA1 71 aa1.51□□□□□ -2.17
VPS41-213ENST00000485955 DNAH7Q8WXX0 4024 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 FAT4Q6V0I7 4981 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 MYH9P35579 1960 aaKnown RBP1.5□□□□□ -2.17
VPS41-213ENST00000485955 LOC107984156A0A0G2JMH3 177 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 PLXNB1O43157 2135 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 SFT2D2O95562 160 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 CYB5AP00167 134 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 SLC25A6P12236 298 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 SSR2P43308 183 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 NUMA1Q14980 2115 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 SLC25A26Q70HW3 274 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 LYPD6Q86Y78 171 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 ARL17AQ8IVW1 177 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 DYNLRB2Q8TF09 96 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 C20orf166-AS1Q96NR2 134 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 OR8B2Q96RD0 313 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 CXCL16Q9H2A7 254 aa1.5□□□□□ -2.17
VPS41-213ENST00000485955 MYO18AQ92614 2054 aaKnown RBP1.5□□□□□ -2.17
VPS41-213ENST00000485955 IGLV10-54A0A075B6I4 117 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 IGHV3-64A0A075B6Q5 118 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 TRAV2A0A0B4J234 112 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 PIGBOS1A0A0B4J2F0 54 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 A0A0J9YX75 114 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 TRBV7-7A0A0K0K1E9 115 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 HMSDA8MTL9 139 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 IBA57-AS1B1ANH7 110 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 F8W1H4 67 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 NUPR1O60356 82 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 BAALC-AS2P0C853 105 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 POLR2JP52435 117 aaKnown RBP1.49□□□□□ -2.17
VPS41-213ENST00000485955 DSCR4P56555 118 aaPredicted RBP1.49□□□□□ -2.17
VPS41-213ENST00000485955 ZNF345Q14585 488 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 RHOHQ15669 191 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 S100A7L2Q5SY68 101 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 ALKAL2Q6UX46 152 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 COMMD6Q7Z4G1 85 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 C15orf53Q8NAA6 179 aa1.49□□□□□ -2.17
VPS41-213ENST00000485955 REG4Q9BYZ8 158 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms