RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 ZNF664Q8N3J9 261 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 PYGO1Q9Y3Y4 419 aa3.67□□□□□ -1.82
CUX1-208ENST00000485792 IGLV10-54A0A075B6I4 117 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.66□□□□□ -1.82
CUX1-208ENST00000485792 GVQW2A0A096LPI5 108 aaPredicted RBP3.66□□□□□ -1.82
CUX1-208ENST00000485792 UBE2L6O14933 153 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 NPSP0C0P6 89 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 HNRNPA3P51991 378 aaKnown RBP3.66□□□□□ -1.82
CUX1-208ENST00000485792 CD164L2Q6UWJ8 174 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 FAM19A3Q7Z5A8 133 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 COMMD7Q86VX2 200 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 ORMDL3Q8N138 153 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 CHCHD10Q8WYQ3 142 aaPredicted RBP3.66□□□□□ -1.82
CUX1-208ENST00000485792 PRELID3AQ96N28 172 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 YPEL4Q96NS1 127 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 KIR2DL4Q99706 377 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 CHAC1Q9BUX1 264 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 GNB1LQ9BYB4 327 aa3.66□□□□□ -1.82
CUX1-208ENST00000485792 IGHV3OR16-9A0A0B4J2B5 98 aa3.65□□□□□ -1.83
CUX1-208ENST00000485792 C1orf196B1AJZ1 125 aa3.65□□□□□ -1.83
CUX1-208ENST00000485792 RPL39P62891 51 aaKnown RBP3.65□□□□□ -1.83
CUX1-208ENST00000485792 RHEBQ15382 184 aa3.65□□□□□ -1.83
CUX1-208ENST00000485792 RNASE13Q5GAN3 156 aaKnown RBP3.65□□□□□ -1.83
CUX1-208ENST00000485792 Q6ZUT4 128 aa3.65□□□□□ -1.83
CUX1-208ENST00000485792 Q8N8P6 123 aa3.65□□□□□ -1.83
CUX1-208ENST00000485792 DMBT1Q9UGM3 2413 aaPredicted RBP3.65□□□□□ -1.83
CUX1-208ENST00000485792 UBR4Q5T4S7 5183 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 IGIPA6NJ69 53 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 HLA-DQA1P01909 254 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 SMAGPQ0VAQ4 97 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 AMMECR1LQ6DCA0 310 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 RNASEKQ6P5S7 137 aaKnown RBP3.64□□□□□ -1.83
CUX1-208ENST00000485792 LINC00173Q6ZV60 143 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 SCXQ7RTU7 201 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 CIRBP-AS1Q8TBR5 109 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 TMEM18Q96B42 140 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 TMEM101Q96IK0 257 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 AMELXQ99217 191 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 OPRPNQ99935 248 aaPredicted RBP3.64□□□□□ -1.83
CUX1-208ENST00000485792 SPANXA1Q9NS26 97 aa3.64□□□□□ -1.83
CUX1-208ENST00000485792 SMR3BP02814 79 aaPredicted RBP3.63□□□□□ -1.83
CUX1-208ENST00000485792 CHTF8P0CG12 524 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 FCER1GP30273 86 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 COX19Q49B96 90 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 ZC2HC1BQ5TFG8 222 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 Q5VSD8 79 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 LINC00526Q96FQ7 95 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 URB1-AS1Q96HZ7 61 aa3.63□□□□□ -1.83
CUX1-208ENST00000485792 ALKBH7Q9BT30 221 aaPredicted RBP3.63□□□□□ -1.83
CUX1-208ENST00000485792 NXT2Q9NPJ8 142 aaKnown RBP3.63□□□□□ -1.83
CUX1-208ENST00000485792 IGLV4-3A0A075B6K6 122 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 A0A096LNJ9 63 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 IGHV1-58A0A0C4DH39 117 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 hDV102S1A0JD36 115 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 MT-ND6P03923 174 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 KIAA0087Q14695 138 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 SS18Q15532 418 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 ORMDL2Q53FV1 153 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 C2orf66Q6UXQ4 117 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 LINC01561Q8N1V8 128 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 SPACA4Q8TDM5 124 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 C2orf48Q96LS8 159 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 MAP1LC3AQ9H492 121 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 PLAC8Q9NZF1 115 aa3.62□□□□□ -1.83
CUX1-208ENST00000485792 IGHV3-64A0A075B6Q5 118 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 A0A087WZ39 114 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.61□□□□□ -1.83
CUX1-208ENST00000485792 F8WDY8 70 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 IFI27P40305 119 aaPredicted RBP3.61□□□□□ -1.83
CUX1-208ENST00000485792 XCL1P47992 114 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 UBE2D1P51668 147 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 LINC00242Q5T6M2 205 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 KRTAP7-1Q8IUC3 87 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 TOMM6Q96B49 74 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 TMEM141Q96I45 108 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 TIMM17AQ99595 171 aa3.61□□□□□ -1.83
CUX1-208ENST00000485792 IGKV3OR2-268A0A0C4DH90 116 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 LINC01549A6NIU2 74 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 COX7A2LO14548 114 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 SNAPINO95295 136 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 RAB5AP20339 215 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 COX6A2Q02221 97 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 KIAA1644Q3SXP7 199 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 HIGD2BQ4VC39 106 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 ERASQ7Z444 233 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 KRTAP11-1Q8IUC1 163 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 SVBPQ8N300 66 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 OR10D4PQ8NGN7 298 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 PRSS3P2Q8NHM4 247 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 CYSLTR1Q9Y271 337 aa3.6□□□□□ -1.83
CUX1-208ENST00000485792 IGLV4-69A0A075B6H9 119 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 IGLV5-45A0A087WSX0 123 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 A0A087WYN8 130 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 TGIF2-C20orf24A0A0A6YYL0 155 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 TRAV13-1A0A0B4J241 112 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 LOC389332A0A1B0GUA5 103 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 APOC3P02656 99 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 TLX1NBP0CAT3 122 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 S100PP25815 95 aa3.59□□□□□ -1.83
CUX1-208ENST00000485792 G0S2P27469 103 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 153.7 ms