RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 AMELXQ99217 191 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 R4GMQ9 66 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 NHSL1Q5SYE7 1610 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 BIVM-ERCC5R4GMW8 1640 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 MYO7BQ6PIF6 2116 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 LRBAP50851 2863 aa-0.43□□□□□ -2.48
VPS50-216ENST00000484954 DNAJC13O75165 2243 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 MGAQ8IWI9 3026 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 ZNF609O15014 1411 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 DNAH8Q96JB1 4490 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 TRAV13-2A0A0B4J235 113 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 TCEAL4Q96EI5 215 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 TP53AIP1Q9HCN2 124 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 CCDC167Q9P0B6 97 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 SPCS1Q9Y6A9 102 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 ARFGEF1Q9Y6D6 1849 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 PI4KAP42356 2102 aa-0.44□□□□□ -2.48
VPS50-216ENST00000484954 DNAH11Q96DT5 4516 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 NBASA2RRP1 2371 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 MKI67P46013 3256 aaKnown RBP-0.45□□□□□ -2.48
VPS50-216ENST00000484954 PPRC1Q5VV67 1664 aaKnown RBP-0.45□□□□□ -2.48
VPS50-216ENST00000484954 MRC1P22897 1456 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 SPAG11AQ6PDA7 123 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 TTC9CQ8N5M4 171 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 RELNP78509 3460 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 PCNTO95613 3336 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 SIPA1L3O60292 1781 aaPredicted RBP-0.45□□□□□ -2.48
VPS50-216ENST00000484954 CEP350Q5VT06 3117 aa-0.45□□□□□ -2.48
VPS50-216ENST00000484954 FAM186AA6NE01 2351 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 C10orf71Q711Q0 1435 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 TRRAPQ9Y4A5 3859 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 PXDNQ92626 1479 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 GOLGA4Q13439 2230 aaKnown RBP-0.46□□□□□ -2.48
VPS50-216ENST00000484954 CTXND1A0A1B0GTU2 59 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 NDUFA2O43678 99 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 ARPC4P59998 168 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 SMIM4Q8WVI0 70 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 SNRNP25Q9BV90 132 aaKnown RBP-0.46□□□□□ -2.48
VPS50-216ENST00000484954 RERGLQ9H628 205 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 LENEPQ9Y5L5 61 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.46□□□□□ -2.48
VPS50-216ENST00000484954 CFAP47Q6ZTR5 3102 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 LRRC37A3O60309 1634 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 MYH6P13533 1939 aa-0.46□□□□□ -2.48
VPS50-216ENST00000484954 IFT172Q9UG01 1749 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 KNL1Q8NG31 2342 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 SZT2Q5T011 3432 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 K7EQZ3 153 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 SELENOWP63302 87 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 KLK9Q2XQG4 91 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 TSLPQ969D9 159 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 AQP10Q96PS8 301 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 PFDN5Q99471 154 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 PDCD10Q9BUL8 212 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 NDUFA4L2Q9NRX3 87 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 SERP1Q9Y6X1 66 aa-0.47□□□□□ -2.48
VPS50-216ENST00000484954 VCANP13611 3396 aa-0.47□□□□□ -2.49
VPS50-216ENST00000484954 LRP6O75581 1613 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 LOC100130705A0A1B0GUX0 176 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 MEIG1Q5JSS6 88 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 TMEM170BQ5T4T1 132 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 Q6AWC8 147 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 Q6JHZ5 121 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 LINC00470Q9BZP3 86 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 LINC01558Q9Y6Z2 57 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 V9GYH0 126 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 CEP152O94986 1710 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 PARP14Q460N5 1801 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 GRIN2AQ12879 1464 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 BCL9LQ86UU0 1499 aa-0.48□□□□□ -2.49
VPS50-216ENST00000484954 MYH9P35579 1960 aaKnown RBP-0.48□□□□□ -2.49
VPS50-216ENST00000484954 ADGRG4Q8IZF6 3080 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 SPTBN5Q9NRC6 3674 aaKnown RBP-0.49□□□□□ -2.49
VPS50-216ENST00000484954 TRBV7-3A0A075B6L6 115 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 TRBV6-1A0A0K0K1D8 114 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 IGLC7A0M8Q6 106 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 F8VRH5 84 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 M0R2T5 61 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 GNG7O60262 68 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 SPRR1BP22528 89 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 BAGE2Q86Y30 109 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 SPRR2FQ96RM1 72 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 SPANXDQ9BXN6 97 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 LINC00474Q9P2X8 69 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 PAIP2BQ9ULR5 123 aaKnown RBP-0.49□□□□□ -2.49
VPS50-216ENST00000484954 PPIP5K1Q6PFW1 1433 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 CEP290O15078 2479 aa-0.49□□□□□ -2.49
VPS50-216ENST00000484954 RANBP2P49792 3224 aaKnown RBP-0.5□□□□□ -2.49
VPS50-216ENST00000484954 LOC730098B7Z3J9 87 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 UQCR11O14957 56 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 S100A3P33764 101 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 BTG2P78543 158 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 C12orf73Q69YU5 71 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 CENPEQ02224 2701 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 CFTRP13569 1480 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 CRYBG3Q68DQ2 2970 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 WDFY3Q8IZQ1 3526 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 PLXNB2O15031 1838 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 ACACAQ13085 2346 aa-0.5□□□□□ -2.49
VPS50-216ENST00000484954 SMG1Q96Q15 3661 aaKnown RBP-0.51□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms