RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 PDE6GP18545 87 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 EFNA4P52798 201 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 POLR2KP53803 58 aaKnown RBP3.46□□□□□ -1.86
USP40-213ENST00000483216 FXYD7P58549 80 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 Q6JHZ5 121 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 PP632Q6XCG6 107 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 FAM223AQ8IWN6 122 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 DEFB108BQ8NET1 73 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 TTTY13Q9BZ97 58 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 LAMA5O15230 3695 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 INTS1Q8N201 2190 aaKnown RBP3.46□□□□□ -1.86
USP40-213ENST00000483216 WDFY3Q8IZQ1 3526 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 CHD6Q8TD26 2715 aa3.46□□□□□ -1.86
USP40-213ENST00000483216 USP24Q9UPU5 2620 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 ITPR1Q14643 2758 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 IGHV7-4-1A0A0J9YVY3 117 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 LOC107984640A0A0U1RRK4 108 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 LRCOL1A6NCL2 159 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 RBMY1BA6NDE4 496 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 RBMY1EA6NEQ0 496 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 E7EUB6 86 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 H3BUA1 57 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 BRI3O95415 125 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 MGPP08493 103 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 RBMY1DP0C7P1 496 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 RBMY1A1P0DJD3 496 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 ZNF80P51504 273 aaPredicted RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 SYNJ2BPP57105 145 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 HIST1H4AP62805 103 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 C10orf55Q5SWW7 151 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 DPH3Q96FX2 82 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 AGPAT4-IT1Q9H0P7 198 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 MRPL36Q9P0J6 103 aaKnown RBP3.45□□□□□ -1.86
USP40-213ENST00000483216 NDUFA12Q9UI09 145 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 SERP1Q9Y6X1 66 aa3.45□□□□□ -1.86
USP40-213ENST00000483216 APC2O95996 2303 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 IGF2RP11717 2491 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 PRR14LQ5THK1 2151 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 IGLV4-60A0A075B6I1 120 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 SMIM26A0A096LP01 95 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 TRAV8-3A0A0A6YYJ7 113 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 SPRR5A0A1B0GTR4 108 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 KNCNA6PVL3 124 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 H7C2G1 150 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 CTSGP08311 255 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 BAALC-AS2P0C853 105 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 RNASE4P34096 147 aaKnown RBP3.44□□□□□ -1.86
USP40-213ENST00000483216 ATP5J2P56134 94 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 KLRB1Q12918 225 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 RBMY1FQ15415 496 aaKnown RBP3.44□□□□□ -1.86
USP40-213ENST00000483216 APRG1Q8IVJ8 170 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 DYNAPQ8N1N2 210 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 DCANP1Q8TF63 244 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 USMG5Q96IX5 58 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 UBL5Q9BZL1 73 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 SVILO95425 2214 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 HEATR1Q9H583 2144 aaKnown RBP3.44□□□□□ -1.86
USP40-213ENST00000483216 PKD1L2Q7Z442 2459 aa3.44□□□□□ -1.86
USP40-213ENST00000483216 NDUFA4O00483 81 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 NDUFA1O15239 70 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 IGHV3-30-3P0DP02 117 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 CCL3L1P16619 93 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 LOXP28300 417 aaPredicted RBP3.43□□□□□ -1.86
USP40-213ENST00000483216 UBE2E1P51965 193 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 LCE1CQ5T751 118 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 LCE1BQ5T7P3 118 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 Q6ZQT7 251 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 KIR2DL5BQ8NHK3 375 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 Q8TAT8 98 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 DYNLRB2Q8TF09 96 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 CCL17Q92583 94 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 V9GYY9 64 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 FAM208BQ5VWN6 2430 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 ZFHX4Q86UP3 3567 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 MGAQ8IWI9 3026 aa3.43□□□□□ -1.86
USP40-213ENST00000483216 IGHV3-21A0A0B4J1V1 117 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 LY6LH3BQJ8 138 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 TMEM256-PLSCR3K7ERE1 68 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 KALRNO60229 2985 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 TRGV3P03979 118 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 CD28P10747 220 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 KRTAP10-1P60331 282 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 SNRPD3P62318 126 aaKnown RBP3.42□□□□□ -1.86
USP40-213ENST00000483216 KIAA0087Q14695 138 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 DAZ4Q86SG3 579 aaKnown RBP3.42□□□□□ -1.86
USP40-213ENST00000483216 GPHB5Q86YW7 130 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 DAZ1Q9NQZ3 744 aaKnown RBP3.42□□□□□ -1.86
USP40-213ENST00000483216 FAM215AQ9Y5M1 114 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 IGSF10Q6WRI0 2623 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 CACNA1DQ01668 2161 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 ATMQ13315 3056 aa3.42□□□□□ -1.86
USP40-213ENST00000483216 CELSR3Q9NYQ7 3312 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 LOC400499M0QZD8 3231 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 PRRC2CQ9Y520 2896 aaKnown RBP3.41□□□□□ -1.86
USP40-213ENST00000483216 FAM236DA0A1B0GTK5 79 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 CRPP02741 224 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 TFF1P04155 84 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 FAM236CP0DP71 79 aa3.41□□□□□ -1.86
USP40-213ENST00000483216 RPL28P46779 137 aaKnown RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms