RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 SERTAD4-AS1Q5TG53 156 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 NTM-AS1Q6ZSK4 140 aa6.51□□□□□ -1.37
SYNE1-224ENST00000478916 CD164L2Q6UWJ8 174 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 PPDPFQ9H3Y8 114 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 NUP210LQ5VU65 1888 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 Q6ZS46 218 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 MUC7Q8TAX7 377 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 UBE2D4Q9Y2X8 147 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 TSHBP01222 138 aa6.5□□□□□ -1.37
SYNE1-224ENST00000478916 UBE2D1P51668 147 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 PRO0628Q9UI54 55 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 CEP192Q8TEP8 1941 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 ZNF73O43830 326 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-224ENST00000478916 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.49□□□□□ -1.37
SYNE1-224ENST00000478916 UBE2D3P61077 147 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 C10orf25Q5T742 122 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 IGLV4-69A0A075B6H9 119 aa6.49□□□□□ -1.37
SYNE1-224ENST00000478916 DSCAMO60469 2012 aa6.48□□□□□ -1.37
SYNE1-224ENST00000478916 ESRGQ1W209 222 aa6.48□□□□□ -1.37
SYNE1-224ENST00000478916 ALPK3Q96L96 1907 aa6.48□□□□□ -1.37
SYNE1-224ENST00000478916 IGLV9-49A0A0B4J1Y8 123 aa6.48□□□□□ -1.37
SYNE1-224ENST00000478916 LOC107984640A0A0U1RRK4 108 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 EIF4EBP1Q13541 118 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-224ENST00000478916 BEAN1Q3B7T3 259 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 BRWD1-AS2P59051 145 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 C10orf99Q6UWK7 81 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 PROK1P58294 105 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 C1orf229Q6ZS94 237 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-224ENST00000478916 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.47□□□□□ -1.37
SYNE1-224ENST00000478916 A0A087WVE0 104 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 Q8N6K4 173 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 Q8N814 137 aa6.47□□□□□ -1.37
SYNE1-224ENST00000478916 LINC00959A0A1B0GUT2 108 aa6.46□□□□□ -1.38
SYNE1-224ENST00000478916 RPL37AP8A6NKH3 93 aa6.46□□□□□ -1.38
SYNE1-224ENST00000478916 Q8N3U1 123 aa6.46□□□□□ -1.38
SYNE1-224ENST00000478916 MUC22E2RYF6 1773 aaPredicted RBP6.46□□□□□ -1.38
SYNE1-224ENST00000478916 Q8IZM0 81 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 ZNF295-AS1Q8N0V1 137 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 PRR14LQ5THK1 2151 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 PTPN13Q12923 2485 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 LIMD2Q9BT23 127 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 H0Y9P7 68 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 IGLV1-40P01703 118 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 LINC01547P58512 204 aaPredicted RBP6.45□□□□□ -1.38
SYNE1-224ENST00000478916 SPG11Q96JI7 2443 aa6.45□□□□□ -1.38
SYNE1-224ENST00000478916 PLAC8L1A1L4L8 177 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 RPL28P46779 137 aaKnown RBP6.44□□□□□ -1.38
SYNE1-224ENST00000478916 LY6G6CO95867 125 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 IGLV2-11P01706 119 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 CRYGAP11844 174 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 C1orf137Q5JT78 98 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 KPRPQ5T749 579 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-224ENST00000478916 Q6ZPA2 131 aa6.44□□□□□ -1.38
SYNE1-224ENST00000478916 BBC3Q96PG8 261 aaPredicted RBP6.44□□□□□ -1.38
SYNE1-224ENST00000478916 hDV103S1A0JD37 113 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 WNK1Q9H4A3 2382 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 AGRNO00468 2067 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 RNASE3P12724 160 aaKnown RBP6.43□□□□□ -1.38
SYNE1-224ENST00000478916 POLR2KP53803 58 aaKnown RBP6.43□□□□□ -1.38
SYNE1-224ENST00000478916 NUPR2A6NF83 97 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 PCOTHQ58A44 107 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 LELP1Q5T871 98 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 IGLV2-18A0A075B6J9 118 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 TMEM254Q8TBM7 123 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 CRIP2P52943 208 aaPredicted RBP6.43□□□□□ -1.38
SYNE1-224ENST00000478916 CRIP3Q6Q6R5 217 aa6.43□□□□□ -1.38
SYNE1-224ENST00000478916 LINC00474Q9P2X8 69 aa6.42□□□□□ -1.38
SYNE1-224ENST00000478916 CACNA1AO00555 2505 aa6.42□□□□□ -1.38
SYNE1-224ENST00000478916 LOC100131303A0A0U1RQF7 123 aa6.42□□□□□ -1.38
SYNE1-224ENST00000478916 PRRC2AP48634 2157 aaKnown RBP6.42□□□□□ -1.38
SYNE1-224ENST00000478916 SPAG11AQ6PDA7 123 aa6.42□□□□□ -1.38
SYNE1-224ENST00000478916 C18orf65Q6ZTR6 163 aa6.42□□□□□ -1.38
SYNE1-224ENST00000478916 A0A087WYN8 130 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 M0R2N4 97 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 CXCL6P80162 114 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 X6R8D5 127 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 ATRXP46100 2492 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 CDC42SE2Q9NRR3 84 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 ATG2AQ2TAZ0 1938 aa6.41□□□□□ -1.38
SYNE1-224ENST00000478916 IGIPA6NJ69 53 aa6.4□□□□□ -1.38
SYNE1-224ENST00000478916 CSPG4Q6UVK1 2322 aa6.4□□□□□ -1.38
SYNE1-224ENST00000478916 CDSNQ15517 529 aa6.4□□□□□ -1.38
SYNE1-224ENST00000478916 LINC00575Q6W349 94 aa6.4□□□□□ -1.38
SYNE1-224ENST00000478916 IGHV6-1A0A0B4J1U7 121 aa6.4□□□□□ -1.39
SYNE1-224ENST00000478916 SORL1Q92673 2214 aa6.4□□□□□ -1.39
SYNE1-224ENST00000478916 SMR3AQ99954 134 aa6.4□□□□□ -1.39
SYNE1-224ENST00000478916 OXLD1Q5BKU9 147 aa6.39□□□□□ -1.39
SYNE1-224ENST00000478916 CYSRT1A8MQ03 144 aa6.39□□□□□ -1.39
SYNE1-224ENST00000478916 C10orf142B7Z368 130 aa6.39□□□□□ -1.39
SYNE1-224ENST00000478916 KLLNB2CW77 178 aa6.39□□□□□ -1.39
SYNE1-224ENST00000478916 CNFNQ9BYD5 112 aa6.39□□□□□ -1.39
SYNE1-224ENST00000478916 PCNX3Q9H6A9 2034 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 REG3GQ6UW15 175 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 HCG22E2RYF7 251 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 KRTAP10-9P60411 292 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 SPINK1P00995 79 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 MRGPRG-AS1Q2M3A8 158 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 NAV2Q8IVL1 2488 aa6.38□□□□□ -1.39
SYNE1-224ENST00000478916 SONP18583 2426 aaKnown RBP6.38□□□□□ -1.39
SYNE1-224ENST00000478916 C16orf95Q9H693 158 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms