RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 LGALSLQ3ZCW2 172 aaPredicted RBP2.74□□□□□ -1.97
USP4-209ENST00000475873 PHF5AQ7RTV0 110 aaKnown RBP2.74□□□□□ -1.97
USP4-209ENST00000475873 COX8CQ7Z4L0 72 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 C15orf40Q8WUR7 153 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 PLEKHB2Q96CS7 222 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 KRTAP4-9Q9BYQ8 210 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 RPS10P5Q9NQ39 176 aa2.74□□□□□ -1.97
USP4-209ENST00000475873 TRBV6-8A0A0A6YYG3 113 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 A0A0B4J2A0 478 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 SMKR1H3BMG3 65 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 CCDC179H3BU77 68 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 K7EP34 96 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 AGPAT2O15120 278 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BKO60814 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 CXorf1O96002 111 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 P01737 135 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BJP06899 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 PYYP10082 97 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 RNASE3P12724 160 aaKnown RBP2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BOP23527 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BBP33778 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BDP58876 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 UBE2D3P61077 147 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BCP62807 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 UBE2D2P62837 147 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 PMAIP1Q13794 54 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST2H2BEQ16778 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 KRTAP13-3Q3SY46 172 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 LRRC37A5PQ49AS3 106 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 MEIG1Q5JSS6 88 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.73□□□□□ -1.97
USP4-209ENST00000475873 Q6ZN92 141 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 NTM-AS1Q6ZSK4 140 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BHQ93079 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 TVP23CQ96ET8 276 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BNQ99877 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 HIST1H2BMQ99879 126 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 KCNIP2Q9NS61 270 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 SHPKQ9UHJ6 478 aa2.73□□□□□ -1.97
USP4-209ENST00000475873 C7orf66A4D0T2 115 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 DIRC3C9JPN6 131 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 CD3DP04234 171 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 SPANXN5Q5MJ07 72 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 ZFP2Q6ZN57 461 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 TEX43Q6ZNM6 134 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 LINC00526Q96FQ7 95 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 MGST2Q99735 147 aa2.72□□□□□ -1.97
USP4-209ENST00000475873 LOC107984640A0A0U1RRK4 108 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 COX7A2P2O60397 106 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 IGLC6P0CF74 106 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 HINT1P49773 126 aaPredicted RBP2.71□□□□□ -1.98
USP4-209ENST00000475873 NDUFV3P56181 108 aaKnown RBP2.71□□□□□ -1.98
USP4-209ENST00000475873 REG3AQ06141 175 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 ARL16Q0P5N6 197 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 PNRC1Q12796 327 aaPredicted RBP2.71□□□□□ -1.98
USP4-209ENST00000475873 GAGE2BQ13066 116 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 GAGE2EQ4V326 116 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 KRTAP13-2Q52LG2 175 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 C9orf116Q5BN46 136 aaPredicted RBP2.71□□□□□ -1.98
USP4-209ENST00000475873 C10orf113Q5VZT2 155 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 AMMECR1LQ6DCA0 310 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 GAGE2AQ6NT46 116 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 MRPL54Q6P161 138 aaKnown RBP2.71□□□□□ -1.98
USP4-209ENST00000475873 LINC00173Q6ZV60 143 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 ANKRD29Q8N6D5 301 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 C20orf203Q8NBC4 194 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 LINC00474Q9P2X8 69 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 GAGE2DQ9UEU5 116 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 CACFD1Q9UGQ2 172 aa2.71□□□□□ -1.98
USP4-209ENST00000475873 IGLV4-60A0A075B6I1 120 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 GVQW2A0A096LPI5 108 aaPredicted RBP2.7□□□□□ -1.98
USP4-209ENST00000475873 C7orf77A4D0Y5 90 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 J3QQQ9 107 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 M0R2T5 61 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 PRYO14603 147 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 TAX1BP3O14907 124 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 LYRM1O43325 122 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 SFT2D2O95562 160 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 IFITM1P13164 125 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 PFN2P35080 140 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 ZNF80P51504 273 aaPredicted RBP2.7□□□□□ -1.98
USP4-209ENST00000475873 PDE6HQ13956 83 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 COA6Q5JTJ3 125 aaKnown RBP2.7□□□□□ -1.98
USP4-209ENST00000475873 UBE2NLQ5JXB2 153 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 C9orf153Q5TBE3 101 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 MIC13Q5XKP0 118 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 Q6ZRG5 221 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 Q6ZUT4 128 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 KCNRGQ8N5I3 272 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 S100A16Q96FQ6 103 aaKnown RBP2.7□□□□□ -1.98
USP4-209ENST00000475873 CHCHD5Q9BSY4 110 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 KRTAP9-8Q9BYQ0 159 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 TMEM191AQ9H0A3 160 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 SLC39A9Q9NUM3 307 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 TMEM14CQ9P0S9 112 aa2.7□□□□□ -1.98
USP4-209ENST00000475873 KMT2DO14686 5537 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 A0A1B0GWB2 263 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 KANTRA0A1W2PQU2 76 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 HMSDA8MTL9 139 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 TRIAP1O43715 76 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms