RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 C7orf77A4D0Y5 90 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 C5orf52A6NGY3 159 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 S100A6P06703 90 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 RNF151Q2KHN1 245 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 FAM229BQ4G0N7 80 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 NUP35Q8NFH5 326 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 NUDT10Q8NFP7 164 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 NUDT11Q96G61 164 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 CAMK2N2Q96S95 79 aa4.57□□□□□ -1.68
USP54-211ENST00000474929 TMEM250H0YL14 139 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.56□□□□□ -1.68
USP54-211ENST00000474929 M0QXV9 152 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 RAB5AP20339 215 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 RPL28P46779 137 aaKnown RBP4.56□□□□□ -1.68
USP54-211ENST00000474929 RPS20P60866 119 aaKnown RBP4.56□□□□□ -1.68
USP54-211ENST00000474929 KRTAP6-3Q3LI67 103 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 SPAG11AQ6PDA7 123 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 LINC00526Q96FQ7 95 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 RNASE7Q9H1E1 156 aaKnown RBP4.56□□□□□ -1.68
USP54-211ENST00000474929 RPS10P5Q9NQ39 176 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 NDUFA12Q9UI09 145 aa4.56□□□□□ -1.68
USP54-211ENST00000474929 XKRY2A2RUG3 117 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 K7EN84 100 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 SNAI2O43623 268 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 SRP19P09132 144 aaKnown RBP4.55□□□□□ -1.68
USP54-211ENST00000474929 CXCL1P09341 107 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 OR5AL1P0C617 328 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 SMIM17P0DL12 118 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 ESDP10768 282 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 SS18Q15532 418 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 AMMECR1LQ6DCA0 310 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 LYZL1Q6UWQ5 148 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 CBLN2Q8IUK8 224 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 C2orf48Q96LS8 159 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 YPEL4Q96NS1 127 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 IMMP2LQ96T52 175 aa4.55□□□□□ -1.68
USP54-211ENST00000474929 TRBV24-1A0A075B6N3 115 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 IGKV2D-26A0A0A0MRZ7 120 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 ZNF727A8MUV8 499 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 C9JQL5 133 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 GATCO43716 136 aaKnown RBP4.54□□□□□ -1.68
USP54-211ENST00000474929 MGPP08493 103 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 IGLC6P0CF74 106 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 S100PP25815 95 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 XCL1P47992 114 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 FAM19A5Q7Z5A7 132 aaPredicted RBP4.54□□□□□ -1.68
USP54-211ENST00000474929 DAND5Q8N907 189 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 SMIM12Q96EX1 92 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 C12orf57Q99622 126 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 SMIM7Q9BQ49 75 aa4.54□□□□□ -1.68
USP54-211ENST00000474929 F2Z2F3 143 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 H7C423 109 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 NTF3P20783 257 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 COTL1Q14019 142 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 TWIST1Q15672 202 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 COX6B2Q6YFQ2 88 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 KRTAP11-1Q8IUC1 163 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 OR5A1Q8NGJ0 315 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 ANAPC16Q96DE5 110 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 NAT8Q9UHE5 227 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 UBE2D4Q9Y2X8 147 aa4.53□□□□□ -1.68
USP54-211ENST00000474929 TRAV9-1A0A075B6T8 112 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 F8WDY8 70 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 PPP1R2P9O14990 202 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 CCL25O15444 150 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 ZNF25P17030 456 aaPredicted RBP4.52□□□□□ -1.69
USP54-211ENST00000474929 MALP21145 153 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 FOXA3P55318 350 aaPredicted RBP4.52□□□□□ -1.69
USP54-211ENST00000474929 TMEM241Q24JQ0 296 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 KRTAP20-1Q3LI63 56 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 SVIPQ8NHG7 77 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 AP1S3Q96PC3 154 aa4.52□□□□□ -1.69
USP54-211ENST00000474929 A8MWL6 223 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 M0QY20 66 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 AKR1D1P51857 326 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 SNRPEP62304 92 aaKnown RBP4.51□□□□□ -1.69
USP54-211ENST00000474929 KRTAP13-2Q52LG2 175 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 COA6Q5JTJ3 125 aaKnown RBP4.51□□□□□ -1.69
USP54-211ENST00000474929 SUMO4Q6EEV6 95 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 CD164L2Q6UWJ8 174 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 LINC01551Q86U37 167 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 FAM19A2Q8N3H0 131 aa4.51□□□□□ -1.69
USP54-211ENST00000474929 TLX1NBP0CAT3 122 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 TRGC1P0CF51 173 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 S100A2P29034 98 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 FABP9Q0Z7S8 132 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 ADIRFQ15847 76 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 COX19Q49B96 90 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 LBHQ53QV2 105 aaPredicted RBP4.5□□□□□ -1.69
USP54-211ENST00000474929 RNASEKQ6P5S7 137 aaKnown RBP4.5□□□□□ -1.69
USP54-211ENST00000474929 FAM231DQ6ZW35 169 aa4.5□□□□□ -1.69
USP54-211ENST00000474929 MRPL35Q9NZE8 188 aaKnown RBP4.5□□□□□ -1.69
USP54-211ENST00000474929 CTRLP40313 264 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 RPL23P62829 140 aaKnown RBP4.49□□□□□ -1.69
USP54-211ENST00000474929 LINC00242Q5T6M2 205 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 RASL11AQ6T310 242 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 SMIM15Q7Z3B0 74 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 BORCS7Q96B45 105 aa4.49□□□□□ -1.69
USP54-211ENST00000474929 TMEM101Q96IK0 257 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms