RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 TMEM136Q6ZRR5 245 aa11.52□□□□□ -0.57
COL7A1-209ENST00000474432 ORMDL3Q8N138 153 aa11.52□□□□□ -0.57
COL7A1-209ENST00000474432 PRELID3AQ96N28 172 aa11.52□□□□□ -0.57
COL7A1-209ENST00000474432 PLA2G2DQ9UNK4 145 aa11.52□□□□□ -0.57
COL7A1-209ENST00000474432 APOMO95445 188 aa11.51□□□□□ -0.57
COL7A1-209ENST00000474432 SPAG11BQ08648 103 aa11.51□□□□□ -0.57
COL7A1-209ENST00000474432 SRSF9Q13242 221 aaKnown RBP eCLIP11.51□□□□□ -0.57
COL7A1-209ENST00000474432 UBR4Q5T4S7 5183 aa11.5□□□□□ -0.57
COL7A1-209ENST00000474432 A0A0J9YXV3 536 aa11.5□□□□□ -0.57
COL7A1-209ENST00000474432 OR10D4PQ8NGN7 298 aa11.49□□□□□ -0.57
COL7A1-209ENST00000474432 LINC01600Q96MT4 127 aa11.49□□□□□ -0.57
COL7A1-209ENST00000474432 PNRC1Q12796 327 aaPredicted RBP11.48□□□□□ -0.57
COL7A1-209ENST00000474432 RNF151Q2KHN1 245 aa11.48□□□□□ -0.57
COL7A1-209ENST00000474432 PYGO1Q9Y3Y4 419 aa11.48□□□□□ -0.57
COL7A1-209ENST00000474432 IGLV4-3A0A075B6K6 122 aa11.47□□□□□ -0.57
COL7A1-209ENST00000474432 IFITM10A6NMD0 228 aa11.47□□□□□ -0.57
COL7A1-209ENST00000474432 C10orf25Q5T742 122 aa11.47□□□□□ -0.57
COL7A1-209ENST00000474432 ORAOV1Q8WV07 137 aa11.47□□□□□ -0.57
COL7A1-209ENST00000474432 ANAPC16Q96DE5 110 aa11.47□□□□□ -0.57
COL7A1-209ENST00000474432 MRPL35Q9NZE8 188 aaKnown RBP11.47□□□□□ -0.57
COL7A1-209ENST00000474432 C9orf116Q5BN46 136 aaPredicted RBP11.46□□□□□ -0.57
COL7A1-209ENST00000474432 SPINK6Q6UWN8 80 aa11.46□□□□□ -0.57
COL7A1-209ENST00000474432 Q6ZRP5 223 aa11.46□□□□□ -0.57
COL7A1-209ENST00000474432 LOC389332A0A1B0GUA5 103 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 MT-ND4LP03901 98 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 RAB5AP20339 215 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 KIAA0087Q14695 138 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 LINC00242Q5T6M2 205 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 LAMTOR2Q9Y2Q5 125 aa11.45□□□□□ -0.58
COL7A1-209ENST00000474432 IFI27P40305 119 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-209ENST00000474432 ODF1Q14990 250 aa11.44□□□□□ -0.58
COL7A1-209ENST00000474432 UNQ6190/PRO20217Q6UXQ8 127 aa11.44□□□□□ -0.58
COL7A1-209ENST00000474432 A0A087WZ39 114 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 F8WDY8 70 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 KRTAP10-8P60410 259 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 RPL18AQ02543 176 aaKnown RBP11.43□□□□□ -0.58
COL7A1-209ENST00000474432 LINC00173Q6ZV60 143 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 Q8N8P6 123 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 C6orf48Q9UBA6 75 aa11.43□□□□□ -0.58
COL7A1-209ENST00000474432 RAB14P61106 215 aa11.42□□□□□ -0.58
COL7A1-209ENST00000474432 CLLU1Q5K131 121 aa11.42□□□□□ -0.58
COL7A1-209ENST00000474432 ZC2HC1BQ5TFG8 222 aa11.42□□□□□ -0.58
COL7A1-209ENST00000474432 PHF5AQ7RTV0 110 aaKnown RBP11.42□□□□□ -0.58
COL7A1-209ENST00000474432 TMEM141Q96I45 108 aa11.42□□□□□ -0.58
COL7A1-209ENST00000474432 MAP1LC3AQ9H492 121 aa11.42□□□□□ -0.58
COL7A1-209ENST00000474432 NDUFA1O15239 70 aa11.41□□□□□ -0.58
COL7A1-209ENST00000474432 TLX1NBP0CAT3 122 aa11.41□□□□□ -0.58
COL7A1-209ENST00000474432 ADCYAP1P18509 176 aa11.41□□□□□ -0.58
COL7A1-209ENST00000474432 UBE2D1P51668 147 aa11.41□□□□□ -0.58
COL7A1-209ENST00000474432 PSORS1C2Q9UIG4 136 aa11.41□□□□□ -0.58
COL7A1-209ENST00000474432 C2orf66Q6UXQ4 117 aa11.4□□□□□ -0.58
COL7A1-209ENST00000474432 KRTAP11-1Q8IUC1 163 aa11.4□□□□□ -0.58
COL7A1-209ENST00000474432 KRTAP7-1Q8IUC3 87 aa11.4□□□□□ -0.58
COL7A1-209ENST00000474432 AMELXQ99217 191 aa11.4□□□□□ -0.58
COL7A1-209ENST00000474432 TGIF2-C20orf24A0A0A6YYL0 155 aa11.39□□□□□ -0.59
COL7A1-209ENST00000474432 FAM168BA1KXE4 195 aa11.39□□□□□ -0.59
COL7A1-209ENST00000474432 IGIPA6NJ69 53 aa11.39□□□□□ -0.59
COL7A1-209ENST00000474432 IMMP2LQ96T52 175 aa11.39□□□□□ -0.59
COL7A1-209ENST00000474432 CYSLTR1Q9Y271 337 aa11.38□□□□□ -0.59
COL7A1-209ENST00000474432 IFITM2Q01629 132 aa11.37□□□□□ -0.59
COL7A1-209ENST00000474432 TEX43Q6ZNM6 134 aa11.37□□□□□ -0.59
COL7A1-209ENST00000474432 REG3GQ6UW15 175 aa11.36□□□□□ -0.59
COL7A1-209ENST00000474432 C2orf82Q6UX34 121 aa11.36□□□□□ -0.59
COL7A1-209ENST00000474432 FAM19A3Q7Z5A8 133 aa11.36□□□□□ -0.59
COL7A1-209ENST00000474432 LINC01561Q8N1V8 128 aa11.36□□□□□ -0.59
COL7A1-209ENST00000474432 K7EMI3 77 aa11.35□□□□□ -0.59
COL7A1-209ENST00000474432 ORMDL2Q53FV1 153 aa11.35□□□□□ -0.59
COL7A1-209ENST00000474432 MT-ND6P03923 174 aa11.34□□□□□ -0.59
COL7A1-209ENST00000474432 NPSP0C0P6 89 aa11.34□□□□□ -0.59
COL7A1-209ENST00000474432 LRP2P98164 4655 aa11.34□□□□□ -0.59
COL7A1-209ENST00000474432 CTDSP1Q9GZU7 261 aa11.34□□□□□ -0.59
COL7A1-209ENST00000474432 TMEM218A2RU14 115 aa11.33□□□□□ -0.6
COL7A1-209ENST00000474432 KIAA1644Q3SXP7 199 aa11.33□□□□□ -0.6
COL7A1-209ENST00000474432 GAGE2EQ4V326 116 aa11.33□□□□□ -0.6
COL7A1-209ENST00000474432 VCX2Q9H322 139 aa11.33□□□□□ -0.6
COL7A1-209ENST00000474432 NXT2Q9NPJ8 142 aaKnown RBP11.33□□□□□ -0.6
COL7A1-209ENST00000474432 GAGE2DQ9UEU5 116 aa11.33□□□□□ -0.6
COL7A1-209ENST00000474432 TRBV30A0A0K0K1B3 111 aa11.32□□□□□ -0.6
COL7A1-209ENST00000474432 C1orf137Q5JT78 98 aa11.32□□□□□ -0.6
COL7A1-209ENST00000474432 UQCC3Q6UW78 93 aa11.32□□□□□ -0.6
COL7A1-209ENST00000474432 C2orf88Q9BSF0 95 aa11.32□□□□□ -0.6
COL7A1-209ENST00000474432 C9orf129Q5T035 196 aaKnown RBP11.31□□□□□ -0.6
COL7A1-209ENST00000474432 Q6ZN92 141 aa11.31□□□□□ -0.6
COL7A1-209ENST00000474432 FAM19A5Q7Z5A7 132 aaPredicted RBP11.31□□□□□ -0.6
COL7A1-209ENST00000474432 NDUFC2-KCTD14E9PQ53 114 aa11.3□□□□□ -0.6
COL7A1-209ENST00000474432 IGLV7-43P04211 117 aa11.3□□□□□ -0.6
COL7A1-209ENST00000474432 TOMM6Q96B49 74 aa11.3□□□□□ -0.6
COL7A1-209ENST00000474432 TIMM17AQ99595 171 aa11.29□□□□□ -0.6
COL7A1-209ENST00000474432 TRAV9-1A0A075B6T8 112 aa11.28□□□□□ -0.6
COL7A1-209ENST00000474432 CDKN2A-AS1Q9UH64 79 aa11.28□□□□□ -0.6
COL7A1-209ENST00000474432 LINC01546A6NGU7 62 aa11.26□□□□□ -0.61
COL7A1-209ENST00000474432 Q8IZM0 81 aa11.26□□□□□ -0.61
COL7A1-209ENST00000474432 PACRGQ96M98 296 aaPredicted RBP11.26□□□□□ -0.61
COL7A1-209ENST00000474432 SEC11CQ9BY50 192 aa11.26□□□□□ -0.61
COL7A1-209ENST00000474432 M0QXV9 152 aa11.25□□□□□ -0.61
COL7A1-209ENST00000474432 ERASQ7Z444 233 aa11.25□□□□□ -0.61
COL7A1-209ENST00000474432 ALKBH7Q9BT30 221 aaPredicted RBP11.25□□□□□ -0.61
COL7A1-209ENST00000474432 GNB1LQ9BYB4 327 aa11.25□□□□□ -0.61
COL7A1-209ENST00000474432 TOMM7Q9P0U1 55 aa11.25□□□□□ -0.61
COL7A1-209ENST00000474432 HERVK_113P63121 156 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms