RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SYCNQ0VAF6 134 aa6.51□□□□□ -1.37
COL6A3-210ENST00000473258 SIPA1L3O60292 1781 aaPredicted RBP6.51□□□□□ -1.37
COL6A3-210ENST00000473258 CDSNQ15517 529 aa6.51□□□□□ -1.37
COL6A3-210ENST00000473258 Q6ZPA2 131 aa6.51□□□□□ -1.37
COL6A3-210ENST00000473258 RALGAPA2Q2PPJ7 1873 aa6.51□□□□□ -1.37
COL6A3-210ENST00000473258 UNQ9165/PRO28630Q6UXU0 137 aa6.51□□□□□ -1.37
COL6A3-210ENST00000473258 ANK1P16157 1881 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 LINC00959A0A1B0GUT2 108 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 PROK1P58294 105 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 GREB1Q4ZG55 1949 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 DOT1LQ8TEK3 1739 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 A0A087WSZ3 146 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 Q8N7P7 452 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 SPATA3Q8NHX4 192 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 SMCR5Q8TEV8 140 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 ZNF580Q9UK33 172 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 LOC100131303A0A0U1RQF7 123 aa6.5□□□□□ -1.37
COL6A3-210ENST00000473258 MUC4Q99102 2169 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 IGLV1-47P01700 117 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 IGHV6-1A0A0B4J1U7 121 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 SLURP1P55000 103 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 DEFB113Q30KQ7 82 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 CCDC140Q96MF4 163 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 CDC42SE2Q9NRR3 84 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 LINC00337Q8N6G1 96 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 IGLV2-18A0A075B6J9 118 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 TP53AIP1Q9HCN2 124 aa6.49□□□□□ -1.37
COL6A3-210ENST00000473258 C9orf66Q5T8R8 295 aa6.48□□□□□ -1.37
COL6A3-210ENST00000473258 ELOF1P60002 83 aaKnown RBP6.48□□□□□ -1.37
COL6A3-210ENST00000473258 AMELXQ99217 191 aa6.48□□□□□ -1.37
COL6A3-210ENST00000473258 CDC42SE1Q9NRR8 79 aa6.48□□□□□ -1.37
COL6A3-210ENST00000473258 C6orf48Q9UBA6 75 aa6.48□□□□□ -1.37
COL6A3-210ENST00000473258 X6R8D5 127 aa6.48□□□□□ -1.37
COL6A3-210ENST00000473258 PRR3P79522 188 aaKnown RBP6.47□□□□□ -1.37
COL6A3-210ENST00000473258 COA5Q86WW8 74 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 A0A0G2JMZ2 1700 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 LRRC37A2A6NM11 1700 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 LRRC37AA6NMS7 1700 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 A6NDX4 124 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 DOPEY1Q5JWR5 2465 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 TICRRQ7Z2Z1 1910 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 KPRPQ5T749 579 aaPredicted RBP6.47□□□□□ -1.37
COL6A3-210ENST00000473258 SMAD5-AS1Q9Y6J3 95 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 BTAF1O14981 1849 aa6.47□□□□□ -1.37
COL6A3-210ENST00000473258 LINC01600Q96MT4 127 aa6.46□□□□□ -1.38
COL6A3-210ENST00000473258 A0A1B0GW54 56 aa6.46□□□□□ -1.38
COL6A3-210ENST00000473258 C19orf84I3L1E1 186 aa6.46□□□□□ -1.38
COL6A3-210ENST00000473258 PRLHP81277 87 aa6.46□□□□□ -1.38
COL6A3-210ENST00000473258 NLRC5Q86WI3 1866 aa6.46□□□□□ -1.38
COL6A3-210ENST00000473258 ZNF702PQ9H963 129 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 SPG11Q96JI7 2443 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 RNF223E7ERA6 249 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 MIR22HGQ0VDD5 57 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 C14orf177Q52M58 125 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 ITGB4P16144 1822 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 CSPG4Q6UVK1 2322 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 RPL37AP8A6NKH3 93 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 UBR3Q6ZT12 1888 aa6.45□□□□□ -1.38
COL6A3-210ENST00000473258 K7EQG2 157 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 Q6ZQT0 140 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 Q8N2B8 174 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 IGLV8-61A0A075B6I0 122 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 PSMG3-AS1Q96PY0 264 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 CYSRT1A8MQ03 144 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 PRR9Q5T870 116 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 PCNX3Q9H6A9 2034 aa6.44□□□□□ -1.38
COL6A3-210ENST00000473258 LOC110117498A0A087WWA1 95 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 COX6A2Q02221 97 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 FAM218AQ96MZ4 157 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 CRIPTQ9P021 101 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 MAP6D1Q9H9H5 199 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 FSTL3O95633 263 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 THSD7AQ9UPZ6 1657 aa6.43□□□□□ -1.38
COL6A3-210ENST00000473258 IGLV9-49A0A0B4J1Y8 123 aa6.42□□□□□ -1.38
COL6A3-210ENST00000473258 KLLNB2CW77 178 aa6.42□□□□□ -1.38
COL6A3-210ENST00000473258 Q5XG85 94 aa6.42□□□□□ -1.38
COL6A3-210ENST00000473258 F8W735 103 aaPredicted RBP6.42□□□□□ -1.38
COL6A3-210ENST00000473258 CRIP3Q6Q6R5 217 aa6.42□□□□□ -1.38
COL6A3-210ENST00000473258 UNQ6190/PRO20217Q6UXQ8 127 aa6.42□□□□□ -1.38
COL6A3-210ENST00000473258 AVPP01185 164 aa6.41□□□□□ -1.38
COL6A3-210ENST00000473258 LINC00574Q9H8X3 128 aa6.41□□□□□ -1.38
COL6A3-210ENST00000473258 PLA2G1BP04054 148 aaKnown RBP6.41□□□□□ -1.38
COL6A3-210ENST00000473258 ZNF106Q9H2Y7 1883 aaKnown RBP6.41□□□□□ -1.38
COL6A3-210ENST00000473258 EGFEM1PQ0D2K5 195 aa6.41□□□□□ -1.38
COL6A3-210ENST00000473258 MRGPRG-AS1Q2M3A8 158 aa6.41□□□□□ -1.38
COL6A3-210ENST00000473258 Q6ZRU5 148 aa6.41□□□□□ -1.38
COL6A3-210ENST00000473258 FRMPD3Q5JV73 1810 aa6.4□□□□□ -1.38
COL6A3-210ENST00000473258 CHCHD7Q9BUK0 85 aa6.4□□□□□ -1.38
COL6A3-210ENST00000473258 DEFB4AO15263 64 aa6.4□□□□□ -1.39
COL6A3-210ENST00000473258 Q1T7F1 81 aa6.4□□□□□ -1.39
COL6A3-210ENST00000473258 LINC01546A6NGU7 62 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 COX8CQ7Z4L0 72 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 C11orf72Q8NBR9 251 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 A8MTW9 85 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 BBC3Q96PG8 261 aaPredicted RBP6.39□□□□□ -1.39
COL6A3-210ENST00000473258 DEFB135Q30KP9 77 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 C6orf223Q8N319 242 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 LINC01006Q8NI28 216 aa6.39□□□□□ -1.39
COL6A3-210ENST00000473258 C1orf229Q6ZS94 237 aaPredicted RBP6.39□□□□□ -1.39
COL6A3-210ENST00000473258 DENND4CQ5VZ89 1909 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms