RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 Q8NDZ9 215 aa3.46□□□□□ -1.86
COL3A1-205ENST00000470167 ZNF625Q96I27 306 aaPredicted RBP3.46□□□□□ -1.86
COL3A1-205ENST00000470167 PRR15LQ9BU68 103 aa3.46□□□□□ -1.86
COL3A1-205ENST00000470167 SMIM2Q9BVW6 85 aa3.46□□□□□ -1.86
COL3A1-205ENST00000470167 MRPL36Q9P0J6 103 aaKnown RBP3.46□□□□□ -1.86
COL3A1-205ENST00000470167 ZNF580Q9UK33 172 aa3.46□□□□□ -1.86
COL3A1-205ENST00000470167 CACNA1HO95180 2353 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV3-43A0A0B4J1X8 118 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV4-61A0A0C4DH41 118 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 CXorf51AA0A1B0GTR3 108 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 C17orf98A8MV24 154 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV4-59P01825 116 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 CHTF8P0CG12 524 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV4-30-4P0DP06 118 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 LINC01547P58512 204 aaPredicted RBP3.45□□□□□ -1.86
COL3A1-205ENST00000470167 PDE6HQ13956 83 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 FAM74A4Q5TZK3 123 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 WFDC9Q8NEX5 89 aa3.45□□□□□ -1.86
COL3A1-205ENST00000470167 KIF26BQ2KJY2 2108 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 CABIN1Q9Y6J0 2220 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 RELNP78509 3460 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV7-81A0A0B4J1V7 117 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV3-38A0A0C4DH36 116 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 IGLV5-39A0A0G2JS06 123 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 SRRM5B3KS81 715 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 KRTAP4-16G5E9R7 235 aaPredicted RBP3.44□□□□□ -1.86
COL3A1-205ENST00000470167 H0YGX0 51 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 BPY2O14599 106 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 NDUFB1O75438 58 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 CNEP1R1Q8N9A8 125 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 CSNK1G2-AS1Q8NCQ2 148 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 LINC00167Q96N53 147 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 CREBBPQ92793 2442 aa3.44□□□□□ -1.86
COL3A1-205ENST00000470167 TRAV12-3A0A0B4J271 114 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 CRPP02741 224 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 DSCR9P59020 149 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 C9orf66Q5T8R8 295 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 C2orf66Q6UXQ4 117 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 SPANXA2-OT1Q8N9U9 137 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 LINC01558Q9Y6Z2 57 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 MPDZO75970 2070 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 LRRK1Q38SD2 2015 aa3.43□□□□□ -1.86
COL3A1-205ENST00000470167 CELSR3Q9NYQ7 3312 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 DSCAML1Q8TD84 2053 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV4-4A0A075B6R2 117 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV3OR16-8A0A075B7F1 116 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 LOC110117498A0A087WWA1 95 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV3-74A0A0B4J1X5 117 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV1-69P01742 117 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 CLPSP04118 112 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 CRIP1P50238 77 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 CNBPP62633 177 aaKnown RBP3.42□□□□□ -1.86
COL3A1-205ENST00000470167 PIGYQ3MUY2 71 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 C9orf129Q5T035 196 aaKnown RBP3.42□□□□□ -1.86
COL3A1-205ENST00000470167 C10orf113Q5VZT2 155 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 LYPD1Q8N2G4 141 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 FDCSPQ8NFU4 85 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 MUC7Q8TAX7 377 aa3.42□□□□□ -1.86
COL3A1-205ENST00000470167 DSPP15924 2871 aaKnown RBP3.42□□□□□ -1.86
COL3A1-205ENST00000470167 ABCA7Q8IZY2 2146 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 ITPR1Q14643 2758 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 MED13Q9UHV7 2174 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 TRAV21A0A0B4J279 112 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 CLPSL1A2RUU4 121 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 LRCOL1A6NCL2 159 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 INAFM1C9JVW0 142 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 TFF1P04155 84 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 MSMBP08118 114 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 IGHV4-38-2P0DP08 117 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 PDE6GP18545 87 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 EGFEM1PQ0D2K5 195 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 DEFB114Q30KQ6 69 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 CASC10Q5T4H9 136 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 ADM2Q7Z4H4 148 aa3.41□□□□□ -1.86
COL3A1-205ENST00000470167 FGF23Q9GZV9 251 aaPredicted RBP3.41□□□□□ -1.86
COL3A1-205ENST00000470167 TLN1Q9Y490 2541 aaKnown RBP3.41□□□□□ -1.86
COL3A1-205ENST00000470167 IGKV1OR2-108A0A075B7D4 117 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 A0A1W2PNM2 257 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 DNAJC9-AS1A6NH13 148 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 DSCAMO60469 2012 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 GAS8-AS1O95177 125 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 TSHBP01222 138 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 IGLV1-47P01700 117 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-11P01762 117 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 IGSF10Q6WRI0 2623 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 INTS1Q8N201 2190 aaKnown RBP3.4□□□□□ -1.87
COL3A1-205ENST00000470167 MIR7-3HGQ8N6C7 128 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 Q8NAQ8 132 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 NPBQ8NG41 125 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 PCNX1Q96RV3 2341 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 HIGD2AQ9BW72 106 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 ORMDL1Q9P0S3 153 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 SHANK1Q9Y566 2161 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 LENEPQ9Y5L5 61 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 SMG1Q96Q15 3661 aaKnown RBP3.4□□□□□ -1.87
COL3A1-205ENST00000470167 MYO15AQ9UKN7 3530 aa3.4□□□□□ -1.87
COL3A1-205ENST00000470167 TNRC6BQ9UPQ9 1833 aaKnown RBP3.4□□□□□ -1.87
COL3A1-205ENST00000470167 A0A087WSZ3 146 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 IGHV3-73A0A0B4J1V6 119 aa3.39□□□□□ -1.87
COL3A1-205ENST00000470167 TRBV10-1A0A0K0K1A3 114 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms