RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 BAGE2Q86Y30 109 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 C2orf48Q96LS8 159 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 RNASE7Q9H1E1 156 aaKnown RBP2.98□□□□□ -1.93
PTPN4-209ENST00000469511 MED28Q9H204 178 aa2.98□□□□□ -1.93
PTPN4-209ENST00000469511 A4D1N5 150 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 SDHAF1A6NFY7 115 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 G3V3Q6 166 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 H7C423 109 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 COX7A2LO14548 114 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 MBP02144 154 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 IFITM3Q01628 133 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 LINC00304Q8N9R0 145 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 OR2D3Q8NGH3 330 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 TSKUQ8WUA8 353 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 TMEM242Q9NWH2 141 aa2.97□□□□□ -1.93
PTPN4-209ENST00000469511 FCGBPQ9Y6R7 5405 aaPredicted RBP2.97□□□□□ -1.93
PTPN4-209ENST00000469511 TRAV13-1A0A0B4J241 112 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 A0A1B0GV50 99 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 MAP1LC3B2A6NCE7 125 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 NCR2O95944 276 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 TLX1NBP0CAT3 122 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 ZNF25P17030 456 aaPredicted RBP2.96□□□□□ -1.94
PTPN4-209ENST00000469511 STOML3Q8TAV4 291 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 FAM104AQ969W3 186 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 BTF3L4Q96K17 158 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 NKX6-2Q9C056 277 aaPredicted RBP2.96□□□□□ -1.94
PTPN4-209ENST00000469511 MAP1LC3BQ9GZQ8 125 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 SMDT1Q9H4I9 107 aa2.96□□□□□ -1.94
PTPN4-209ENST00000469511 MRPL35Q9NZE8 188 aaKnown RBP2.96□□□□□ -1.94
PTPN4-209ENST00000469511 RAB19A4D1S5 217 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 PMCHP20382 165 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 KIAA0087Q14695 138 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 C2orf82Q6UX34 121 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 TMUB2Q71RG4 321 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 C3orf22Q8N5N4 141 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 ORAOV1Q8WV07 137 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 TMEM101Q96IK0 257 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 C22orf24Q9Y442 160 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 ALG5Q9Y673 324 aa2.95□□□□□ -1.94
PTPN4-209ENST00000469511 C1orf196B1AJZ1 125 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 I3L3M4 83 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 SSNA1O43805 119 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 TRGC1P0CF51 173 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 PET100P0DJ07 73 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 RPL35P42766 123 aaKnown RBP2.94□□□□□ -1.94
PTPN4-209ENST00000469511 Q6ZUT4 128 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 MRPL52Q86TS9 123 aaKnown RBP2.94□□□□□ -1.94
PTPN4-209ENST00000469511 LINC00469Q8N7U9 141 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 IMMP2LQ96T52 175 aa2.94□□□□□ -1.94
PTPN4-209ENST00000469511 IGHV3OR16-9A0A0B4J2B5 98 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 NDUFA1O15239 70 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 S100A9P06702 114 aaKnown RBP2.93□□□□□ -1.94
PTPN4-209ENST00000469511 CTRLP40313 264 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 POLR2KP53803 58 aaKnown RBP2.93□□□□□ -1.94
PTPN4-209ENST00000469511 KRTAP13-1Q8IUC0 172 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 C9orf62Q8N4C0 152 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 LINC00337Q8N6G1 96 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 ENKURQ8TC29 256 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 MRAP2Q96G30 205 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 PRAC1Q96KF2 57 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 MARVELD1Q9BSK0 173 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 KRTAP9-8Q9BYQ0 159 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 CYTL1Q9NRR1 136 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 UBE2D4Q9Y2X8 147 aa2.93□□□□□ -1.94
PTPN4-209ENST00000469511 FLGP20930 4061 aaPredicted RBP2.92□□□□□ -1.94
PTPN4-209ENST00000469511 TRBV20OR9-2A0A075B6H5 130 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 TRBV6-5A0A0K0K1A5 114 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 RPL37AP8A6NKH3 93 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 F2Z2F3 143 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 SMKR1H3BMG3 65 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 IFNA1P01562 189 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CFC1BP0CG36 223 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CFC1P0CG37 223 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 RPS20P60866 119 aaKnown RBP2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CCL20P78556 96 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 TMEM241Q24JQ0 296 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CENPWQ5EE01 88 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 AKR1C8PQ5T2L2 129 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 NOTCH2NLQ7Z3S9 236 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 OR10D4PQ8NGN7 298 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 LITAFQ99732 161 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CCDC32Q9BV29 185 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 CNFNQ9BYD5 112 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 XAGE1AQ9HD64 81 aa2.92□□□□□ -1.94
PTPN4-209ENST00000469511 C7orf77A4D0Y5 90 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 KRTAP4-16G5E9R7 235 aaPredicted RBP2.91□□□□□ -1.94
PTPN4-209ENST00000469511 NUPR1O60356 82 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 BCE1O60756 84 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 RPL28P46779 137 aaKnown RBP2.91□□□□□ -1.94
PTPN4-209ENST00000469511 RPL39P62891 51 aaKnown RBP2.91□□□□□ -1.94
PTPN4-209ENST00000469511 ADAMTSL4-AS1Q5T5F5 129 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 KCNRGQ8N5I3 272 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 SFT2D1Q8WV19 159 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 LINC00167Q96N53 147 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 TCEAL7Q9BRU2 100 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 ALKBH7Q9BT30 221 aaPredicted RBP2.91□□□□□ -1.94
PTPN4-209ENST00000469511 PYGO1Q9Y3Y4 419 aa2.91□□□□□ -1.94
PTPN4-209ENST00000469511 IGKV2D-26A0A0A0MRZ7 120 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 NDUFC2-KCTD14E9PQ53 114 aa2.9□□□□□ -1.95
PTPN4-209ENST00000469511 UPK1BO75841 260 aa2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 102.4 ms