RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 A0A096LNJ9 63 aa7.8□□□□□ -1.16
VPS13D-204ENST00000469054 hDV102S1A0JD36 115 aa7.8□□□□□ -1.16
VPS13D-204ENST00000469054 HBDP02042 147 aa7.8□□□□□ -1.16
VPS13D-204ENST00000469054 LINC00173Q6ZV60 143 aa7.8□□□□□ -1.16
VPS13D-204ENST00000469054 C15orf56Q8N910 161 aa7.8□□□□□ -1.16
VPS13D-204ENST00000469054 CHCHD1Q96BP2 118 aaKnown RBP7.8□□□□□ -1.16
VPS13D-204ENST00000469054 IGHV1-58A0A0C4DH39 117 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 COX7A2LO14548 114 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 UBE2D1P51668 147 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 PMCHL1Q16048 86 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 LINC00242Q5T6M2 205 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 C5orf38Q86SI9 138 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 BAGE3Q86Y29 109 aa7.79□□□□□ -1.16
VPS13D-204ENST00000469054 IGHV3OR16-9A0A0B4J2B5 98 aa7.78□□□□□ -1.16
VPS13D-204ENST00000469054 MALP21145 153 aa7.78□□□□□ -1.16
VPS13D-204ENST00000469054 KRTAP10-1P60331 282 aa7.78□□□□□ -1.16
VPS13D-204ENST00000469054 GVQW2A0A096LPI5 108 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-204ENST00000469054 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.77□□□□□ -1.17
VPS13D-204ENST00000469054 COX6A2Q02221 97 aa7.77□□□□□ -1.17
VPS13D-204ENST00000469054 HIGD2BQ4VC39 106 aa7.77□□□□□ -1.17
VPS13D-204ENST00000469054 PDZD11Q5EBL8 140 aa7.77□□□□□ -1.17
VPS13D-204ENST00000469054 HSBP1O75506 76 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 ATP5LO75964 103 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 APOMO95445 188 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 GHRHP01286 108 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 SLPIP03973 132 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 CNBPP62633 177 aaKnown RBP7.76□□□□□ -1.17
VPS13D-204ENST00000469054 PMVKQ15126 192 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 FAM19A3Q7Z5A8 133 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 CST9LQ9H4G1 147 aa7.76□□□□□ -1.17
VPS13D-204ENST00000469054 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.75□□□□□ -1.17
VPS13D-204ENST00000469054 ZNF561-AS1K7EIQ3 104 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 SERF1AO75920 110 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 SEC11AP67812 179 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 LINC01620Q4KN68 170 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 C9orf163Q8N9P6 203 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 DNAH8Q96JB1 4490 aa7.75□□□□□ -1.17
VPS13D-204ENST00000469054 A0A087WZ39 114 aa7.74□□□□□ -1.17
VPS13D-204ENST00000469054 A0A0J9YXV3 536 aa7.74□□□□□ -1.17
VPS13D-204ENST00000469054 LINC00310P59036 64 aa7.74□□□□□ -1.17
VPS13D-204ENST00000469054 HERVK_113P63121 156 aa7.74□□□□□ -1.17
VPS13D-204ENST00000469054 FAM19A2Q8N3H0 131 aa7.74□□□□□ -1.17
VPS13D-204ENST00000469054 APOBP04114 4563 aaKnown RBP7.73□□□□□ -1.17
VPS13D-204ENST00000469054 IGHV3-64A0A075B6Q5 118 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BKO60814 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 CDK2AP2O75956 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BJP06899 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BOP23527 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BBP33778 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BDP58876 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BCP62807 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST2H2BEQ16778 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.73□□□□□ -1.17
VPS13D-204ENST00000469054 LINC01561Q8N1V8 128 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BHQ93079 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 LINC00526Q96FQ7 95 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BNQ99877 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 HIST1H2BMQ99879 126 aa7.73□□□□□ -1.17
VPS13D-204ENST00000469054 GEMIN7Q9H840 131 aaKnown RBP7.73□□□□□ -1.17
VPS13D-204ENST00000469054 IGLV4-69A0A075B6H9 119 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 TINCRA0A1B0GVN0 87 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 NUPR1O60356 82 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 NDUFA6P56556 154 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 OR10D4PQ8NGN7 298 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 ORAOV1Q8WV07 137 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 FAM30AQ9NZY2 134 aa7.72□□□□□ -1.17
VPS13D-204ENST00000469054 SPAG11BQ08648 103 aa7.71□□□□□ -1.18
VPS13D-204ENST00000469054 IFI27L1Q96BM0 104 aa7.71□□□□□ -1.18
VPS13D-204ENST00000469054 CDKN2A-AS1Q9UH64 79 aa7.71□□□□□ -1.18
VPS13D-204ENST00000469054 KIAA1109Q2LD37 5005 aa7.71□□□□□ -1.18
VPS13D-204ENST00000469054 LEPROTL1O95214 131 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 SYCNQ0VAF6 134 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 SDIM1Q6ZPB5 146 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 Q6ZSA8 131 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 LINC00469Q8N7U9 141 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 C2orf48Q96LS8 159 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 CARD19Q96LW7 228 aa7.7□□□□□ -1.18
VPS13D-204ENST00000469054 IGLV5-45A0A087WSX0 123 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 F8WDY8 70 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 IGLC3P0DOY3 106 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 XGP55808 180 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 PACRGQ96M98 296 aaPredicted RBP7.69□□□□□ -1.18
VPS13D-204ENST00000469054 CAMK2N2Q96S95 79 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 HSPG2P98160 4391 aa7.69□□□□□ -1.18
VPS13D-204ENST00000469054 TRAV12-1A0A0B4J245 112 aa7.68□□□□□ -1.18
VPS13D-204ENST00000469054 KIAA0087Q14695 138 aa7.68□□□□□ -1.18
VPS13D-204ENST00000469054 Q6ZRU5 148 aa7.68□□□□□ -1.18
VPS13D-204ENST00000469054 CHAC1Q9BUX1 264 aa7.68□□□□□ -1.18
VPS13D-204ENST00000469054 RYR1P21817 5038 aa7.68□□□□□ -1.18
VPS13D-204ENST00000469054 HSPB8Q9UJY1 196 aa7.67□□□□□ -1.18
VPS13D-204ENST00000469054 CHTOPQ9Y3Y2 248 aaKnown RBP7.67□□□□□ -1.18
VPS13D-204ENST00000469054 SMIM1B2RUZ4 78 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 H3BRM9 83 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 NDUFA1O15239 70 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 PRSS2P07478 247 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 FABP4P15090 132 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 ZNF22P17026 224 aaPredicted RBP7.66□□□□□ -1.18
VPS13D-204ENST00000469054 HAMPP81172 84 aa7.66□□□□□ -1.18
VPS13D-204ENST00000469054 COA6Q5JTJ3 125 aaKnown RBP7.66□□□□□ -1.18
VPS13D-204ENST00000469054 MRPL35Q9NZE8 188 aaKnown RBP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms