RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 COX11Q9Y6N1 276 aa5.87□□□□□ -1.47
SYNE1-214ENST00000454018 TRAV8-4A0A0B4J246 113 aa5.86□□□□□ -1.47
SYNE1-214ENST00000454018 C1orf196B1AJZ1 125 aa5.86□□□□□ -1.47
SYNE1-214ENST00000454018 HSBP1O75506 76 aa5.86□□□□□ -1.47
SYNE1-214ENST00000454018 Q6ZN92 141 aa5.86□□□□□ -1.47
SYNE1-214ENST00000454018 Q6ZRN7 208 aaPredicted RBP5.86□□□□□ -1.47
SYNE1-214ENST00000454018 TMEM141Q96I45 108 aa5.86□□□□□ -1.47
SYNE1-214ENST00000454018 IGLV4-3A0A075B6K6 122 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 A0A096LNJ9 63 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 hDV102S1A0JD36 115 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 IGIPA6NJ69 53 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 SERF1AO75920 110 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 ERASQ7Z444 233 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 RYR2Q92736 4967 aa5.85□□□□□ -1.47
SYNE1-214ENST00000454018 IGKV2D-24A0A075B6R9 120 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 IGKV3OR2-268A0A0C4DH90 116 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 RTL8CO15255 209 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 CCL25O15444 150 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 PSCAO43653 123 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 TEX43Q6ZNM6 134 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 LINC00336Q6ZUF6 198 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 SCGB3A1Q96QR1 104 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 C2orf88Q9BSF0 95 aa5.84□□□□□ -1.47
SYNE1-214ENST00000454018 IFITM10A6NMD0 228 aa5.84□□□□□ -1.48
SYNE1-214ENST00000454018 F8WDY8 70 aa5.84□□□□□ -1.48
SYNE1-214ENST00000454018 PMCHL1Q16048 86 aa5.84□□□□□ -1.48
SYNE1-214ENST00000454018 RNASE13Q5GAN3 156 aaKnown RBP5.84□□□□□ -1.48
SYNE1-214ENST00000454018 FAM104AQ969W3 186 aa5.84□□□□□ -1.48
SYNE1-214ENST00000454018 FRAS1Q86XX4 4008 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 IGLV10-54A0A075B6I4 117 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 LINC00959A0A1B0GUT2 108 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-214ENST00000454018 ATP5LO75964 103 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 SS18Q15532 418 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 PDZD11Q5EBL8 140 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 COA6Q5JTJ3 125 aaKnown RBP5.83□□□□□ -1.48
SYNE1-214ENST00000454018 AMELXQ99217 191 aa5.83□□□□□ -1.48
SYNE1-214ENST00000454018 OPRPNQ99935 248 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-214ENST00000454018 TRAV13-1A0A0B4J241 112 aa5.82□□□□□ -1.48
SYNE1-214ENST00000454018 LINC00173Q6ZV60 143 aa5.82□□□□□ -1.48
SYNE1-214ENST00000454018 CHCHD10Q8WYQ3 142 aaPredicted RBP5.82□□□□□ -1.48
SYNE1-214ENST00000454018 VCX2Q9H322 139 aa5.82□□□□□ -1.48
SYNE1-214ENST00000454018 KRTAP26-1Q6PEX3 210 aa5.81□□□□□ -1.48
SYNE1-214ENST00000454018 FAM19A2Q8N3H0 131 aa5.81□□□□□ -1.48
SYNE1-214ENST00000454018 LEPROTL1O95214 131 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 XCL1P47992 114 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 UBE2D1P51668 147 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 SEC11AP67812 179 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 PMVKQ15126 192 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 CD164L2Q6UWJ8 174 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 BAALCQ8WXS3 180 aa5.8□□□□□ -1.48
SYNE1-214ENST00000454018 NUPR1O60356 82 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 NDUFA6P56556 154 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 FAM19A3Q7Z5A8 133 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 IFI27L1Q96BM0 104 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 PACRGQ96M98 296 aaPredicted RBP5.79□□□□□ -1.48
SYNE1-214ENST00000454018 HSPB8Q9UJY1 196 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 A0A087WTM6 91 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 LRCOL1A6NCL2 159 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 C14orf177Q52M58 125 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 LINC00242Q5T6M2 205 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 MAPKAPK5-AS1Q8N8E1 139 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 CST9LQ9H4G1 147 aa5.79□□□□□ -1.48
SYNE1-214ENST00000454018 RYR3Q15413 4870 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 IGHV3OR16-9A0A0B4J2B5 98 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 A0A0U1RRA0 63 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 COX7A2LO14548 114 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 S100A6P06703 90 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 HERVK_113P63121 156 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 LCE3BQ5TA77 95 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 ZC2HC1BQ5TFG8 222 aa5.78□□□□□ -1.48
SYNE1-214ENST00000454018 DNAH2Q9P225 4427 aa5.77□□□□□ -1.49
SYNE1-214ENST00000454018 DNAH10Q8IVF4 4471 aa5.77□□□□□ -1.49
SYNE1-214ENST00000454018 TRAV12-1A0A0B4J245 112 aa5.77□□□□□ -1.49
SYNE1-214ENST00000454018 PRSS1P07477 247 aa5.77□□□□□ -1.49
SYNE1-214ENST00000454018 GEMIN7Q9H840 131 aaKnown RBP5.77□□□□□ -1.49
SYNE1-214ENST00000454018 IGHV1-58A0A0C4DH39 117 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 TINCRA0A1B0GVN0 87 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 LECT2O14960 151 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 APOMO95445 188 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 IGLC3P0DOY3 106 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 FABP4P15090 132 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 WFDC2Q14508 124 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 Q8N814 137 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 C15orf56Q8N910 161 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 CHAC1Q9BUX1 264 aa5.76□□□□□ -1.49
SYNE1-214ENST00000454018 IGLV5-45A0A087WSX0 123 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 A0A087WZ39 114 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 GVQW2A0A096LPI5 108 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-214ENST00000454018 A0A0J9YXV3 536 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 A0A1B0GVY2 172 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 LINC01561Q8N1V8 128 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 NTN5Q8WTR8 489 aaPredicted RBP5.75□□□□□ -1.49
SYNE1-214ENST00000454018 MAP1LC3CQ9BXW4 147 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 DNAH17Q9UFH2 4485 aa5.75□□□□□ -1.49
SYNE1-214ENST00000454018 IGLV4-69A0A075B6H9 119 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 F8VRH5 84 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 COX6A2Q02221 97 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 C5orf38Q86SI9 138 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 LINC00469Q8N7U9 141 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms