RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 C2orf66Q6UXQ4 117 aa15.77■□□□□ 0.12
RAPGEF1-206ENST00000438647 TMEM141Q96I45 108 aa15.77■□□□□ 0.12
RAPGEF1-206ENST00000438647 IGLV4-3A0A075B6K6 122 aa15.76■□□□□ 0.11
RAPGEF1-206ENST00000438647 G0S2P27469 103 aa15.76■□□□□ 0.11
RAPGEF1-206ENST00000438647 KIAA1644Q3SXP7 199 aa15.76■□□□□ 0.11
RAPGEF1-206ENST00000438647 PRSS3P2Q8NHM4 247 aa15.76■□□□□ 0.11
RAPGEF1-206ENST00000438647 MYCBP2O75592 4640 aa15.75■□□□□ 0.11
RAPGEF1-206ENST00000438647 FLG2Q5D862 2391 aaPredicted RBP15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 IGLV4-69A0A075B6H9 119 aa15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 A0A087WYN8 130 aa15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 MT-ND6P03923 174 aa15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 Q6ZN92 141 aa15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 TEX43Q6ZNM6 134 aa15.74■□□□□ 0.11
RAPGEF1-206ENST00000438647 IGHV3OR16-9A0A0B4J2B5 98 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 IGKV2-24A0A0C4DH68 120 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 NPSP0C0P6 89 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 RPL37AP61513 92 aaKnown RBP15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 OR10D4PQ8NGN7 298 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 C2orf48Q96LS8 159 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 C2orf88Q9BSF0 95 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 LINC00474Q9P2X8 69 aa15.73■□□□□ 0.11
RAPGEF1-206ENST00000438647 TGIF2-C20orf24A0A0A6YYL0 155 aa15.72■□□□□ 0.11
RAPGEF1-206ENST00000438647 NDUFA5Q16718 116 aa15.72■□□□□ 0.11
RAPGEF1-206ENST00000438647 MAJINQ3KP22 176 aa15.72■□□□□ 0.11
RAPGEF1-206ENST00000438647 CAMK2N2Q96S95 79 aa15.72■□□□□ 0.11
RAPGEF1-206ENST00000438647 SPAG11BQ08648 103 aa15.71■□□□□ 0.11
RAPGEF1-206ENST00000438647 PLAC8Q9NZF1 115 aa15.71■□□□□ 0.11
RAPGEF1-206ENST00000438647 KRTAP10-4P60372 401 aaPredicted RBP15.7■□□□□ 0.1
RAPGEF1-206ENST00000438647 APOC3P02656 99 aa15.69■□□□□ 0.1
RAPGEF1-206ENST00000438647 PAPPA-AS1Q5QFB9 102 aa15.69■□□□□ 0.1
RAPGEF1-206ENST00000438647 VCX2Q9H322 139 aa15.69■□□□□ 0.1
RAPGEF1-206ENST00000438647 A0A096LNI7 61 aa15.68■□□□□ 0.1
RAPGEF1-206ENST00000438647 Q6ZRU5 148 aa15.68■□□□□ 0.1
RAPGEF1-206ENST00000438647 SVBPQ8N300 66 aa15.68■□□□□ 0.1
RAPGEF1-206ENST00000438647 ORAOV1Q8WV07 137 aa15.68■□□□□ 0.1
RAPGEF1-206ENST00000438647 ALKBH7Q9BT30 221 aaPredicted RBP15.68■□□□□ 0.1
RAPGEF1-206ENST00000438647 IGIPA6NJ69 53 aa15.67■□□□□ 0.1
RAPGEF1-206ENST00000438647 F8WDY8 70 aa15.67■□□□□ 0.1
RAPGEF1-206ENST00000438647 SNAPINO95295 136 aa15.67■□□□□ 0.1
RAPGEF1-206ENST00000438647 LINC00242Q5T6M2 205 aa15.67■□□□□ 0.1
RAPGEF1-206ENST00000438647 MRPL18Q9H0U6 180 aaKnown RBP15.67■□□□□ 0.1
RAPGEF1-206ENST00000438647 LOC107984640A0A0U1RRK4 108 aa15.66■□□□□ 0.1
RAPGEF1-206ENST00000438647 UBE2D1P51668 147 aa15.66■□□□□ 0.1
RAPGEF1-206ENST00000438647 FABP9Q0Z7S8 132 aa15.66■□□□□ 0.1
RAPGEF1-206ENST00000438647 STPG4Q8N801 248 aa15.66■□□□□ 0.1
RAPGEF1-206ENST00000438647 AMELXQ99217 191 aa15.66■□□□□ 0.1
RAPGEF1-206ENST00000438647 A0A087WZ39 114 aa15.65■□□□□ 0.1
RAPGEF1-206ENST00000438647 TOMM6Q96B49 74 aa15.65■□□□□ 0.1
RAPGEF1-206ENST00000438647 TIMM17AQ99595 171 aa15.65■□□□□ 0.1
RAPGEF1-206ENST00000438647 LINC01549A6NIU2 74 aa15.64■□□□□ 0.09
RAPGEF1-206ENST00000438647 C7orf33Q8WU49 177 aa15.64■□□□□ 0.09
RAPGEF1-206ENST00000438647 DMBT1Q9UGM3 2413 aaPredicted RBP15.64■□□□□ 0.09
RAPGEF1-206ENST00000438647 RNF151Q2KHN1 245 aa15.63■□□□□ 0.09
RAPGEF1-206ENST00000438647 LINC00173Q6ZV60 143 aa15.63■□□□□ 0.09
RAPGEF1-206ENST00000438647 LINC01546A6NGU7 62 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 NDUFA1O15239 70 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 PTTG1IPP53801 180 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 ZC2HC1BQ5TFG8 222 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 ERASQ7Z444 233 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 LINC01561Q8N1V8 128 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 SMCO4Q9NRQ5 59 aa15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 MRPL35Q9NZE8 188 aaKnown RBP15.61■□□□□ 0.09
RAPGEF1-206ENST00000438647 SEC11AP67812 179 aa15.6■□□□□ 0.09
RAPGEF1-206ENST00000438647 GAGE2BQ13066 116 aa15.6■□□□□ 0.09
RAPGEF1-206ENST00000438647 FA2HQ7L5A8 372 aa15.6■□□□□ 0.09
RAPGEF1-206ENST00000438647 SCGB3A1Q96QR1 104 aa15.6■□□□□ 0.09
RAPGEF1-206ENST00000438647 FAM19A3Q7Z5A8 133 aa15.59■□□□□ 0.09
RAPGEF1-206ENST00000438647 TRAPPC1Q9Y5R8 145 aa15.59■□□□□ 0.09
RAPGEF1-206ENST00000438647 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.58■□□□□ 0.08
RAPGEF1-206ENST00000438647 PKHD1L1Q86WI1 4243 aa15.58■□□□□ 0.08
RAPGEF1-206ENST00000438647 J3QL48 77 aa15.57■□□□□ 0.08
RAPGEF1-206ENST00000438647 HERVK_113P63121 156 aa15.57■□□□□ 0.08
RAPGEF1-206ENST00000438647 RPL18AQ02543 176 aaKnown RBP15.57■□□□□ 0.08
RAPGEF1-206ENST00000438647 KRTAP29-1A8MX34 341 aaPredicted RBP15.56■□□□□ 0.08
RAPGEF1-206ENST00000438647 HERC1Q15751 4861 aa15.56■□□□□ 0.08
RAPGEF1-206ENST00000438647 A0A0J9YXV3 536 aa15.54■□□□□ 0.08
RAPGEF1-206ENST00000438647 KIAA0087Q14695 138 aa15.54■□□□□ 0.08
RAPGEF1-206ENST00000438647 GEMIN7Q9H840 131 aaKnown RBP15.54■□□□□ 0.08
RAPGEF1-206ENST00000438647 UNQ6190/PRO20217Q6UXQ8 127 aa15.53■□□□□ 0.08
RAPGEF1-206ENST00000438647 PACRGQ96M98 296 aaPredicted RBP15.52■□□□□ 0.08
RAPGEF1-206ENST00000438647 PRSS2P07478 247 aa15.51■□□□□ 0.07
RAPGEF1-206ENST00000438647 C10orf25Q5T742 122 aa15.51■□□□□ 0.07
RAPGEF1-206ENST00000438647 TRBV30A0A0K0K1B3 111 aa15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 OXTP01178 125 aa15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 TLX1NBP0CAT3 122 aa15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 HNRNPA3P51991 378 aaKnown RBP15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 C18orf32Q8TCD1 76 aa15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 C6orf48Q9UBA6 75 aa15.5■□□□□ 0.07
RAPGEF1-206ENST00000438647 FAT3Q8TDW7 4589 aa15.49■□□□□ 0.07
RAPGEF1-206ENST00000438647 CDKN2A-AS1Q9UH64 79 aa15.49■□□□□ 0.07
RAPGEF1-206ENST00000438647 LRP1Q07954 4544 aaKnown RBP15.49■□□□□ 0.07
RAPGEF1-206ENST00000438647 TOMM7Q9P0U1 55 aa15.48■□□□□ 0.07
RAPGEF1-206ENST00000438647 LINC00614P0C842 121 aa15.47■□□□□ 0.07
RAPGEF1-206ENST00000438647 RAB5BP61020 215 aa15.47■□□□□ 0.07
RAPGEF1-206ENST00000438647 C9orf116Q5BN46 136 aaPredicted RBP15.47■□□□□ 0.07
RAPGEF1-206ENST00000438647 Q8IZM0 81 aa15.47■□□□□ 0.07
RAPGEF1-206ENST00000438647 TINCRA0A1B0GVN0 87 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 CKS1BP61024 79 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 PRR3P79522 188 aaKnown RBP15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 PMVKQ15126 192 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms