RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RPS10P5Q9NQ39 176 aa9.69□□□□□ -0.86
LIMS3-201ENST00000437679 IGLV4-3A0A075B6K6 122 aa9.68□□□□□ -0.86
LIMS3-201ENST00000437679 COX19Q49B96 90 aa9.68□□□□□ -0.86
LIMS3-201ENST00000437679 C2orf66Q6UXQ4 117 aa9.68□□□□□ -0.86
LIMS3-201ENST00000437679 TMEM141Q96I45 108 aa9.68□□□□□ -0.86
LIMS3-201ENST00000437679 IGLV4-69A0A075B6H9 119 aa9.67□□□□□ -0.86
LIMS3-201ENST00000437679 A0A087WYN8 130 aa9.67□□□□□ -0.86
LIMS3-201ENST00000437679 IGKV2-24A0A0C4DH68 120 aa9.67□□□□□ -0.86
LIMS3-201ENST00000437679 G0S2P27469 103 aa9.67□□□□□ -0.86
LIMS3-201ENST00000437679 RPL37AP61513 92 aaKnown RBP9.67□□□□□ -0.86
LIMS3-201ENST00000437679 Q6ZN92 141 aa9.67□□□□□ -0.86
LIMS3-201ENST00000437679 DMBT1Q9UGM3 2413 aaPredicted RBP9.66□□□□□ -0.86
LIMS3-201ENST00000437679 IGHV3OR16-9A0A0B4J2B5 98 aa9.66□□□□□ -0.86
LIMS3-201ENST00000437679 MAJINQ3KP22 176 aa9.66□□□□□ -0.86
LIMS3-201ENST00000437679 TEX43Q6ZNM6 134 aa9.66□□□□□ -0.86
LIMS3-201ENST00000437679 CAMK2N2Q96S95 79 aa9.66□□□□□ -0.86
LIMS3-201ENST00000437679 C2orf88Q9BSF0 95 aa9.66□□□□□ -0.86
LIMS3-201ENST00000437679 TGIF2-C20orf24A0A0A6YYL0 155 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 MT-ND6P03923 174 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 SPAG11BQ08648 103 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 NDUFA5Q16718 116 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 OR10D4PQ8NGN7 298 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 C2orf48Q96LS8 159 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 LINC00474Q9P2X8 69 aa9.65□□□□□ -0.86
LIMS3-201ENST00000437679 MYCBP2O75592 4640 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 A0A096LNI7 61 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 APOC3P02656 99 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 NPSP0C0P6 89 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 Q6ZRU5 148 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 ORAOV1Q8WV07 137 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 VCX2Q9H322 139 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 PLAC8Q9NZF1 115 aa9.64□□□□□ -0.87
LIMS3-201ENST00000437679 KRTAP10-4P60372 401 aaPredicted RBP9.63□□□□□ -0.87
LIMS3-201ENST00000437679 FABP9Q0Z7S8 132 aa9.63□□□□□ -0.87
LIMS3-201ENST00000437679 LINC00242Q5T6M2 205 aa9.63□□□□□ -0.87
LIMS3-201ENST00000437679 ALKBH7Q9BT30 221 aaPredicted RBP9.63□□□□□ -0.87
LIMS3-201ENST00000437679 MRPL18Q9H0U6 180 aaKnown RBP9.63□□□□□ -0.87
LIMS3-201ENST00000437679 LOC107984640A0A0U1RRK4 108 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 IGIPA6NJ69 53 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 SNAPINO95295 136 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 UBE2D1P51668 147 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 PAPPA-AS1Q5QFB9 102 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 SVBPQ8N300 66 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 STPG4Q8N801 248 aa9.62□□□□□ -0.87
LIMS3-201ENST00000437679 F8WDY8 70 aa9.61□□□□□ -0.87
LIMS3-201ENST00000437679 C7orf33Q8WU49 177 aa9.61□□□□□ -0.87
LIMS3-201ENST00000437679 TOMM6Q96B49 74 aa9.61□□□□□ -0.87
LIMS3-201ENST00000437679 AMELXQ99217 191 aa9.61□□□□□ -0.87
LIMS3-201ENST00000437679 A0A087WZ39 114 aa9.6□□□□□ -0.87
LIMS3-201ENST00000437679 GAGE2BQ13066 116 aa9.6□□□□□ -0.87
LIMS3-201ENST00000437679 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
LIMS3-201ENST00000437679 LINC00173Q6ZV60 143 aa9.6□□□□□ -0.87
LIMS3-201ENST00000437679 TIMM17AQ99595 171 aa9.6□□□□□ -0.87
LIMS3-201ENST00000437679 NDUFA1O15239 70 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 PTTG1IPP53801 180 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 RNF151Q2KHN1 245 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 FA2HQ7L5A8 372 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 SCGB3A1Q96QR1 104 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 SMCO4Q9NRQ5 59 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 TRAPPC1Q9Y5R8 145 aa9.59□□□□□ -0.87
LIMS3-201ENST00000437679 LINC01549A6NIU2 74 aa9.58□□□□□ -0.88
LIMS3-201ENST00000437679 J3QL48 77 aa9.58□□□□□ -0.88
LIMS3-201ENST00000437679 ERASQ7Z444 233 aa9.58□□□□□ -0.88
LIMS3-201ENST00000437679 LINC01561Q8N1V8 128 aa9.58□□□□□ -0.88
LIMS3-201ENST00000437679 MRPL35Q9NZE8 188 aaKnown RBP9.58□□□□□ -0.88
LIMS3-201ENST00000437679 LINC01546A6NGU7 62 aa9.57□□□□□ -0.88
LIMS3-201ENST00000437679 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.57□□□□□ -0.88
LIMS3-201ENST00000437679 SEC11AP67812 179 aa9.57□□□□□ -0.88
LIMS3-201ENST00000437679 A0A0J9YXV3 536 aa9.56□□□□□ -0.88
LIMS3-201ENST00000437679 RPL18AQ02543 176 aaKnown RBP9.56□□□□□ -0.88
LIMS3-201ENST00000437679 FAM19A3Q7Z5A8 133 aa9.56□□□□□ -0.88
LIMS3-201ENST00000437679 KRTAP29-1A8MX34 341 aaPredicted RBP9.55□□□□□ -0.88
LIMS3-201ENST00000437679 HERVK_113P63121 156 aa9.55□□□□□ -0.88
LIMS3-201ENST00000437679 UNQ6190/PRO20217Q6UXQ8 127 aa9.55□□□□□ -0.88
LIMS3-201ENST00000437679 GEMIN7Q9H840 131 aaKnown RBP9.55□□□□□ -0.88
LIMS3-201ENST00000437679 KIAA0087Q14695 138 aa9.54□□□□□ -0.88
LIMS3-201ENST00000437679 C10orf25Q5T742 122 aa9.54□□□□□ -0.88
LIMS3-201ENST00000437679 PRSS2P07478 247 aa9.53□□□□□ -0.88
LIMS3-201ENST00000437679 HNRNPA3P51991 378 aaKnown RBP9.53□□□□□ -0.88
LIMS3-201ENST00000437679 PACRGQ96M98 296 aaPredicted RBP9.53□□□□□ -0.88
LIMS3-201ENST00000437679 C6orf48Q9UBA6 75 aa9.53□□□□□ -0.88
LIMS3-201ENST00000437679 OXTP01178 125 aa9.52□□□□□ -0.89
LIMS3-201ENST00000437679 C18orf32Q8TCD1 76 aa9.52□□□□□ -0.89
LIMS3-201ENST00000437679 TOMM7Q9P0U1 55 aa9.52□□□□□ -0.89
LIMS3-201ENST00000437679 PKHD1L1Q86WI1 4243 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 TRBV30A0A0K0K1B3 111 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 A0A1W2PNN7 141 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 TLX1NBP0CAT3 122 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 C9orf116Q5BN46 136 aaPredicted RBP9.51□□□□□ -0.89
LIMS3-201ENST00000437679 CDKN2A-AS1Q9UH64 79 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 HERC1Q15751 4861 aa9.51□□□□□ -0.89
LIMS3-201ENST00000437679 LINC00614P0C842 121 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 RAB5BP61020 215 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 CKS1BP61024 79 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 PRR3P79522 188 aaKnown RBP9.5□□□□□ -0.89
LIMS3-201ENST00000437679 PMVKQ15126 192 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 C6orf226Q5I0X4 101 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 C2orf82Q6UX34 121 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 LINC00469Q8N7U9 141 aa9.5□□□□□ -0.89
LIMS3-201ENST00000437679 CST9LQ9H4G1 147 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms