RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 Q6ZVQ6 151 aa11.22□□□□□ -0.61
PTPRF-206ENST00000429895 FAM19A3Q7Z5A8 133 aa11.22□□□□□ -0.61
PTPRF-206ENST00000429895 GAS8-AS1O95177 125 aa11.22□□□□□ -0.61
PTPRF-206ENST00000429895 AVPP01185 164 aa11.22□□□□□ -0.61
PTPRF-206ENST00000429895 KIAA1549Q9HCM3 1950 aa11.22□□□□□ -0.61
PTPRF-206ENST00000429895 KRTAP10-9P60411 292 aa11.21□□□□□ -0.61
PTPRF-206ENST00000429895 KIAA1549LQ6ZVL6 1849 aa11.21□□□□□ -0.61
PTPRF-206ENST00000429895 ALPK3Q96L96 1907 aa11.21□□□□□ -0.61
PTPRF-206ENST00000429895 IGLV5-52A0A0A0MRZ9 124 aa11.21□□□□□ -0.61
PTPRF-206ENST00000429895 KLLNB2CW77 178 aa11.21□□□□□ -0.61
PTPRF-206ENST00000429895 MED12LQ86YW9 2145 aa11.21□□□□□ -0.62
PTPRF-206ENST00000429895 NDUFA7O95182 113 aa11.21□□□□□ -0.62
PTPRF-206ENST00000429895 A6NED7 52 aa11.2□□□□□ -0.62
PTPRF-206ENST00000429895 C9orf116Q5BN46 136 aaPredicted RBP11.2□□□□□ -0.62
PTPRF-206ENST00000429895 BDP1A6H8Y1 2624 aa11.2□□□□□ -0.62
PTPRF-206ENST00000429895 TIMM17BO60830 172 aa11.19□□□□□ -0.62
PTPRF-206ENST00000429895 PRR14LQ5THK1 2151 aa11.19□□□□□ -0.62
PTPRF-206ENST00000429895 C6orf223Q8N319 242 aa11.19□□□□□ -0.62
PTPRF-206ENST00000429895 NUP210LQ5VU65 1888 aa11.19□□□□□ -0.62
PTPRF-206ENST00000429895 UNQ6190/PRO20217Q6UXQ8 127 aa11.19□□□□□ -0.62
PTPRF-206ENST00000429895 MRPL55Q7Z7F7 128 aaKnown RBP11.19□□□□□ -0.62
PTPRF-206ENST00000429895 COX17Q14061 63 aa11.18□□□□□ -0.62
PTPRF-206ENST00000429895 ESRGQ1W209 222 aa11.18□□□□□ -0.62
PTPRF-206ENST00000429895 CELA1Q9UNI1 258 aa11.18□□□□□ -0.62
PTPRF-206ENST00000429895 X6R8D5 127 aa11.18□□□□□ -0.62
PTPRF-206ENST00000429895 MRPS36P82909 103 aaKnown RBP11.18□□□□□ -0.62
PTPRF-206ENST00000429895 CDC42SE2Q9NRR3 84 aa11.18□□□□□ -0.62
PTPRF-206ENST00000429895 RPL28P46779 137 aaKnown RBP11.17□□□□□ -0.62
PTPRF-206ENST00000429895 Q8IZM0 81 aa11.17□□□□□ -0.62
PTPRF-206ENST00000429895 CRIP2P52943 208 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-206ENST00000429895 NOTCH2Q04721 2471 aa11.17□□□□□ -0.62
PTPRF-206ENST00000429895 SORL1Q92673 2214 aa11.16□□□□□ -0.62
PTPRF-206ENST00000429895 REG3GQ6UW15 175 aa11.15□□□□□ -0.62
PTPRF-206ENST00000429895 COL4A4P53420 1690 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-206ENST00000429895 LST1O00453 97 aa11.15□□□□□ -0.62
PTPRF-206ENST00000429895 POLR2KP53803 58 aaKnown RBP11.15□□□□□ -0.62
PTPRF-206ENST00000429895 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.15□□□□□ -0.63
PTPRF-206ENST00000429895 CSPG4Q6UVK1 2322 aa11.15□□□□□ -0.63
PTPRF-206ENST00000429895 ATRXP46100 2492 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 IGHV6-1A0A0B4J1U7 121 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 ODF3L2Q3SX64 289 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 Q6ZTC4 211 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 V9GYY9 64 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 LINC01556Q5JQF7 62 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 SPG11Q96JI7 2443 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 PRO3102Q9H379 93 aa11.14□□□□□ -0.63
PTPRF-206ENST00000429895 PTPN13Q12923 2485 aa11.13□□□□□ -0.63
PTPRF-206ENST00000429895 PRR3P79522 188 aaKnown RBP11.13□□□□□ -0.63
PTPRF-206ENST00000429895 LTBP2Q14767 1821 aa11.13□□□□□ -0.63
PTPRF-206ENST00000429895 C1orf137Q5JT78 98 aa11.13□□□□□ -0.63
PTPRF-206ENST00000429895 SERP2Q8N6R1 65 aa11.12□□□□□ -0.63
PTPRF-206ENST00000429895 TRBV10-3A0A0K0K1G6 114 aa11.12□□□□□ -0.63
PTPRF-206ENST00000429895 COX6A2Q02221 97 aa11.11□□□□□ -0.63
PTPRF-206ENST00000429895 PCDH15Q96QU1 1955 aa11.11□□□□□ -0.63
PTPRF-206ENST00000429895 SONP18583 2426 aaKnown RBP11.1□□□□□ -0.63
PTPRF-206ENST00000429895 CUL9Q8IWT3 2517 aa11.1□□□□□ -0.63
PTPRF-206ENST00000429895 IGLV4-60A0A075B6I1 120 aa11.1□□□□□ -0.63
PTPRF-206ENST00000429895 NDUFC1O43677 76 aa11.1□□□□□ -0.63
PTPRF-206ENST00000429895 LINC00242Q5T6M2 205 aa11.09□□□□□ -0.63
PTPRF-206ENST00000429895 C2orf91Q6ZV80 131 aa11.09□□□□□ -0.63
PTPRF-206ENST00000429895 ATP5EP56381 51 aaPredicted RBP11.08□□□□□ -0.64
PTPRF-206ENST00000429895 SPINK1P00995 79 aa11.08□□□□□ -0.64
PTPRF-206ENST00000429895 EGFEM1PQ0D2K5 195 aa11.08□□□□□ -0.64
PTPRF-206ENST00000429895 NTM-AS1Q6ZSK4 140 aa11.07□□□□□ -0.64
PTPRF-206ENST00000429895 LINC00694P0DN24 101 aa11.07□□□□□ -0.64
PTPRF-206ENST00000429895 ACACBO00763 2458 aa11.07□□□□□ -0.64
PTPRF-206ENST00000429895 LINC00208Q96KT6 92 aa11.06□□□□□ -0.64
PTPRF-206ENST00000429895 IGLV1-51P01701 117 aa11.06□□□□□ -0.64
PTPRF-206ENST00000429895 C1orf134Q5TEV5 83 aa11.06□□□□□ -0.64
PTPRF-206ENST00000429895 FSHBP01225 129 aa11.06□□□□□ -0.64
PTPRF-206ENST00000429895 Q6Q795 121 aa11.06□□□□□ -0.64
PTPRF-206ENST00000429895 FHL2Q14192 279 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 DEFB116Q30KQ4 102 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 HIVEP3Q5T1R4 2406 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 CCDC179H3BU77 68 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 Q9BRP9 147 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 ANKHD1Q8IWZ3 2542 aaKnown RBP11.05□□□□□ -0.64
PTPRF-206ENST00000429895 Q8N814 137 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 CHCHD7Q9BUK0 85 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 PCNX3Q9H6A9 2034 aa11.05□□□□□ -0.64
PTPRF-206ENST00000429895 A0A087WYN8 130 aa11.04□□□□□ -0.64
PTPRF-206ENST00000429895 IGIPA6NJ69 53 aa11.04□□□□□ -0.64
PTPRF-206ENST00000429895 SMIM1B2RUZ4 78 aa11.04□□□□□ -0.64
PTPRF-206ENST00000429895 PRYO14603 147 aa11.04□□□□□ -0.64
PTPRF-206ENST00000429895 PCOTHQ58A44 107 aa11.04□□□□□ -0.64
PTPRF-206ENST00000429895 TRBV7-6A0A0J9YX20 115 aa11.02□□□□□ -0.64
PTPRF-206ENST00000429895 LINC01547P58512 204 aaPredicted RBP11.02□□□□□ -0.64
PTPRF-206ENST00000429895 COX7CP15954 63 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 Q6JHZ5 121 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 MUC7Q8TAX7 377 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 YPEL4Q96NS1 127 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 CEP192Q8TEP8 1941 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 SRCAPQ6ZRS2 3230 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 EP400Q96L91 3159 aa11.01□□□□□ -0.65
PTPRF-206ENST00000429895 PRRC2AP48634 2157 aaKnown RBP11□□□□□ -0.65
PTPRF-206ENST00000429895 IMUPQ9GZP8 106 aa11□□□□□ -0.65
PTPRF-206ENST00000429895 XGP55808 180 aa10.99□□□□□ -0.65
PTPRF-206ENST00000429895 A0A087WVE0 104 aa10.99□□□□□ -0.65
PTPRF-206ENST00000429895 SOSTDC1Q6X4U4 206 aa10.98□□□□□ -0.65
PTPRF-206ENST00000429895 Q6ZSN1 163 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms