RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 RIGQ13278 110 aa10.96□□□□□ -0.65
UPK3BP1-201ENST00000428678 TMEM241Q24JQ0 296 aa10.96□□□□□ -0.65
UPK3BP1-201ENST00000428678 IGHV3OR16-9A0A0B4J2B5 98 aa10.95□□□□□ -0.66
UPK3BP1-201ENST00000428678 RPL39P62891 51 aaKnown RBP10.95□□□□□ -0.66
UPK3BP1-201ENST00000428678 SMDT1Q9H4I9 107 aa10.95□□□□□ -0.66
UPK3BP1-201ENST00000428678 LINC01551Q86U37 167 aa10.94□□□□□ -0.66
UPK3BP1-201ENST00000428678 KRTAP7-1Q8IUC3 87 aa10.94□□□□□ -0.66
UPK3BP1-201ENST00000428678 SMIM7Q9BQ49 75 aa10.94□□□□□ -0.66
UPK3BP1-201ENST00000428678 IFITM10A6NMD0 228 aa10.93□□□□□ -0.66
UPK3BP1-201ENST00000428678 OSTCQ9NRP0 149 aa10.93□□□□□ -0.66
UPK3BP1-201ENST00000428678 MRPL51Q4U2R6 128 aaKnown RBP10.92□□□□□ -0.66
UPK3BP1-201ENST00000428678 HBBP68871 147 aa10.91□□□□□ -0.66
UPK3BP1-201ENST00000428678 FAM104AQ969W3 186 aa10.91□□□□□ -0.66
UPK3BP1-201ENST00000428678 SPANXA1Q9NS26 97 aa10.91□□□□□ -0.66
UPK3BP1-201ENST00000428678 CARHSP1Q9Y2V2 147 aaKnown RBP10.91□□□□□ -0.66
UPK3BP1-201ENST00000428678 TSPAN13O95857 204 aa10.9□□□□□ -0.66
UPK3BP1-201ENST00000428678 BLOC1S1P78537 153 aa10.9□□□□□ -0.66
UPK3BP1-201ENST00000428678 FAM104BQ5XKR9 115 aa10.9□□□□□ -0.66
UPK3BP1-201ENST00000428678 C20orf78Q9BR46 151 aa10.9□□□□□ -0.66
UPK3BP1-201ENST00000428678 FAT4Q6V0I7 4981 aa10.9□□□□□ -0.66
UPK3BP1-201ENST00000428678 TGIF2-C20orf24A0A0A6YYL0 155 aa10.89□□□□□ -0.67
UPK3BP1-201ENST00000428678 TCAPO15273 167 aa10.89□□□□□ -0.67
UPK3BP1-201ENST00000428678 MRPS36P82909 103 aaKnown RBP10.89□□□□□ -0.67
UPK3BP1-201ENST00000428678 V9GYV3 84 aa10.89□□□□□ -0.67
UPK3BP1-201ENST00000428678 ZNF727A8MUV8 499 aa10.88□□□□□ -0.67
UPK3BP1-201ENST00000428678 CKS2P33552 79 aa10.88□□□□□ -0.67
UPK3BP1-201ENST00000428678 TCTE3Q8IZS6 198 aa10.88□□□□□ -0.67
UPK3BP1-201ENST00000428678 EIF5A2Q9GZV4 153 aaKnown RBP10.88□□□□□ -0.67
UPK3BP1-201ENST00000428678 TRBV30A0A0K0K1B3 111 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 LINC00862A6NCI5 91 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 NDUFC2-KCTD14E9PQ53 114 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 RPL32P62910 135 aaKnown RBP10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 KIAA0087Q14695 138 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 C9orf129Q5T035 196 aaKnown RBP10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 ALKAL2Q6UX46 152 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 SMIM2Q9BVW6 85 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 NAT8BQ9UHF3 227 aa10.87□□□□□ -0.67
UPK3BP1-201ENST00000428678 TRBV24-1A0A075B6N3 115 aa10.86□□□□□ -0.67
UPK3BP1-201ENST00000428678 ZNF861PO60384 105 aa10.86□□□□□ -0.67
UPK3BP1-201ENST00000428678 C2orf82Q6UX34 121 aa10.86□□□□□ -0.67
UPK3BP1-201ENST00000428678 TNFRSF6BO95407 300 aa10.85□□□□□ -0.67
UPK3BP1-201ENST00000428678 PACRGQ96M98 296 aaPredicted RBP10.85□□□□□ -0.67
UPK3BP1-201ENST00000428678 LCE2AQ5TA79 106 aaPredicted RBP10.83□□□□□ -0.68
UPK3BP1-201ENST00000428678 D6R8Y8 96 aa10.82□□□□□ -0.68
UPK3BP1-201ENST00000428678 FAM74A3Q4VXF1 159 aa10.82□□□□□ -0.68
UPK3BP1-201ENST00000428678 LINC00242Q5T6M2 205 aa10.82□□□□□ -0.68
UPK3BP1-201ENST00000428678 NUPR1O60356 82 aa10.81□□□□□ -0.68
UPK3BP1-201ENST00000428678 SRP19P09132 144 aaKnown RBP10.81□□□□□ -0.68
UPK3BP1-201ENST00000428678 IFI27P40305 119 aaPredicted RBP10.81□□□□□ -0.68
UPK3BP1-201ENST00000428678 A0A1B0GW15 77 aa10.8□□□□□ -0.68
UPK3BP1-201ENST00000428678 NPYP01303 97 aa10.8□□□□□ -0.68
UPK3BP1-201ENST00000428678 LINC00469Q8N7U9 141 aa10.8□□□□□ -0.68
UPK3BP1-201ENST00000428678 A0A087X002 238 aa10.79□□□□□ -0.68
UPK3BP1-201ENST00000428678 SMIM27A0A1W2PRY6 76 aa10.79□□□□□ -0.68
UPK3BP1-201ENST00000428678 CTDSP1Q9GZU7 261 aa10.79□□□□□ -0.68
UPK3BP1-201ENST00000428678 C22orf24Q9Y442 160 aa10.79□□□□□ -0.68
UPK3BP1-201ENST00000428678 IGLV4-3A0A075B6K6 122 aa10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 KRTAP9-6A0A140TA67 174 aa10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 RAB5AP20339 215 aa10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 RPL23P62829 140 aaKnown RBP10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 ADIRFQ15847 76 aa10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 LBHQ53QV2 105 aaPredicted RBP10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 TYMSOSQ8TAI1 123 aa10.78□□□□□ -0.68
UPK3BP1-201ENST00000428678 F8W036 122 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 PRSS2P07478 247 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 CRYGAP11844 174 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 MRPL54Q6P161 138 aaKnown RBP10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 TMEM141Q96I45 108 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 XAGE1AQ9HD64 81 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 TOMM7Q9P0U1 55 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 PYGO1Q9Y3Y4 419 aa10.77□□□□□ -0.69
UPK3BP1-201ENST00000428678 RPL28P46779 137 aaKnown RBP10.76□□□□□ -0.69
UPK3BP1-201ENST00000428678 CKS1BP61024 79 aa10.76□□□□□ -0.69
UPK3BP1-201ENST00000428678 TEX43Q6ZNM6 134 aa10.76□□□□□ -0.69
UPK3BP1-201ENST00000428678 S100A8P05109 93 aa10.75□□□□□ -0.69
UPK3BP1-201ENST00000428678 LINC01561Q8N1V8 128 aa10.75□□□□□ -0.69
UPK3BP1-201ENST00000428678 PPBPP02775 128 aa10.74□□□□□ -0.69
UPK3BP1-201ENST00000428678 C2orf88Q9BSF0 95 aa10.74□□□□□ -0.69
UPK3BP1-201ENST00000428678 BCE1O60756 84 aa10.73□□□□□ -0.69
UPK3BP1-201ENST00000428678 C6orf226Q5I0X4 101 aa10.73□□□□□ -0.69
UPK3BP1-201ENST00000428678 Q6ZN92 141 aa10.73□□□□□ -0.69
UPK3BP1-201ENST00000428678 ZC2HC1BQ5TFG8 222 aa10.72□□□□□ -0.69
UPK3BP1-201ENST00000428678 MRPL55Q7Z7F7 128 aaKnown RBP10.72□□□□□ -0.69
UPK3BP1-201ENST00000428678 ORMDL3Q8N138 153 aa10.72□□□□□ -0.69
UPK3BP1-201ENST00000428678 RETNLBQ9BQ08 111 aa10.72□□□□□ -0.69
UPK3BP1-201ENST00000428678 A0A1B0GXF2 115 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 TMEM136Q6ZRR5 245 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 PRELID3AQ96N28 172 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 ALKBH7Q9BT30 221 aaPredicted RBP10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 ANAPC11Q9NYG5 84 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 TP73-AS1Q9UF72 201 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 NAT8Q9UHE5 227 aa10.71□□□□□ -0.69
UPK3BP1-201ENST00000428678 Q8IZM0 81 aa10.7□□□□□ -0.7
UPK3BP1-201ENST00000428678 LINC00173Q6ZV60 143 aa10.69□□□□□ -0.7
UPK3BP1-201ENST00000428678 VCX2Q9H322 139 aa10.69□□□□□ -0.7
UPK3BP1-201ENST00000428678 LOC389332A0A1B0GUA5 103 aa10.68□□□□□ -0.7
UPK3BP1-201ENST00000428678 AKAP14Q86UN6 197 aa10.68□□□□□ -0.7
UPK3BP1-201ENST00000428678 CDIP1Q9H305 208 aa10.68□□□□□ -0.7
UPK3BP1-201ENST00000428678 CYSLTR1Q9Y271 337 aa10.68□□□□□ -0.7
UPK3BP1-201ENST00000428678 RPL37AP8A6NKH3 93 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms