RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 KRTAP13-4Q3LI77 160 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 MEIG1Q5JSS6 88 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 UNQ5815/PRO19632Q6UWF5 114 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 Q6ZUT4 128 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 TCTEX1D1Q8N7M0 179 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 TMEM203Q969S6 136 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 SDF2Q99470 211 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 CGREF1Q99674 301 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 WFDC10AQ9H1F0 79 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 FAT2Q9NYQ8 4349 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 PLXNB2O15031 1838 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 TSC2P49815 1807 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 PARP14Q460N5 1801 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 SORL1Q92673 2214 aa1.51□□□□□ -2.17
USP40-204ENST00000427947 MICAL3Q7RTP6 2002 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 MYH9P35579 1960 aaKnown RBP1.5□□□□□ -2.17
USP40-204ENST00000427947 PTPRFP10586 1907 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 PHIPQ8WWQ0 1821 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 POLEQ07864 2286 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 TRAV23DV6A0A075B6W5 121 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 A0A1W2PRS3 328 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 M0R2P5 195 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 SNAPC5O75971 98 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 S100A1P23297 94 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 POLR2JP52435 117 aaKnown RBP1.5□□□□□ -2.17
USP40-204ENST00000427947 CCSMST1Q4G0I0 132 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 SPRNQ5BIV9 151 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 KRTAP26-1Q6PEX3 210 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 ATP11AUNQ6ZP68 121 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 ATP6V0E2Q8NHE4 81 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 ZNF563Q8TA94 476 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 LIMD2Q9BT23 127 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 TMEM14CQ9P0S9 112 aa1.5□□□□□ -2.17
USP40-204ENST00000427947 MYLKQ15746 1914 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 TRBV6-7A0A0A0MS04 114 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 CCL25O15444 150 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 MRPS14O60783 128 aaKnown RBP1.49□□□□□ -2.17
USP40-204ENST00000427947 IFNGP01579 166 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 IGKCP01834 107 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 HIST1H1DP16402 221 aaKnown RBP1.49□□□□□ -2.17
USP40-204ENST00000427947 SCIMPQ6UWF3 145 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 SLC25A26Q70HW3 274 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 DYNLRB2Q8TF09 96 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 MED9Q9NWA0 146 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 TAS2R8Q9NYW2 309 aa1.49□□□□□ -2.17
USP40-204ENST00000427947 ZFC3H1O60293 1989 aaKnown RBP1.48□□□□□ -2.17
USP40-204ENST00000427947 TMEM30CPA0ZSE6 113 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 F6UZH7 168 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 JMJD7-PLA2G4BH0Y9G9 81 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 HCRTO43612 131 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 NUPR1O60356 82 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 TFF1P04155 84 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 AKAIN1P0CW23 69 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.48□□□□□ -2.17
USP40-204ENST00000427947 COPS9Q8WXC6 57 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 DPH3Q96FX2 82 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 SEC11CQ9BY50 192 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 LOC285556D6RIA3 1793 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 TANC2Q9HCD6 1990 aa1.48□□□□□ -2.17
USP40-204ENST00000427947 IGKV3D-7A0A0C4DH55 119 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 IGKV3OR2-268A0A0C4DH90 116 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 LOC100130705A0A1B0GUX0 176 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 SNCGO76070 127 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 IGHV3-33P01772 117 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 APODP05090 189 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 IL5P05113 134 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 IL9P15248 144 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 S100PP25815 95 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 LINC01545Q5VT33 79 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 CSAG1Q6PB30 78 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 PLPP5Q8NEB5 264 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 VSTM2AQ8TAG5 236 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 BOKQ9UMX3 212 aaPredicted RBP1.47□□□□□ -2.17
USP40-204ENST00000427947 ZFP30Q9Y2G7 519 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 DOCK1Q14185 1865 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 HEATR5BQ9P2D3 2071 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 SDK1Q7Z5N4 2213 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 RP1P56715 2156 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 PLIN4Q96Q06 1357 aa1.47□□□□□ -2.17
USP40-204ENST00000427947 GBF1Q92538 1859 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 MYO7AQ13402 2215 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 TRAV12-2A0A075B6T6 113 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 MIF4GDA9UHW6 222 aaKnown RBP1.46□□□□□ -2.18
USP40-204ENST00000427947 MRPS10P82664 201 aaKnown RBP1.46□□□□□ -2.18
USP40-204ENST00000427947 RHOHQ15669 191 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 OCIAD2Q56VL3 154 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 OR2T2Q6IF00 324 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 LINC00322Q6ZN03 302 aaPredicted RBP1.46□□□□□ -2.18
USP40-204ENST00000427947 LINC00299Q6ZSB3 139 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 SPTSSAQ969W0 71 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 TMEM242Q9NWH2 141 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 SCN3BQ9NY72 215 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 TET1Q8NFU7 2136 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 PLXNA1Q9UIW2 1896 aa1.46□□□□□ -2.18
USP40-204ENST00000427947 CITO14578 2027 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 MCM3APO60318 1980 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 CEP192Q8TEP8 1941 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 IGKV2-40A0A087WW87 121 aaPredicted RBP1.45□□□□□ -2.18
USP40-204ENST00000427947 IGLV3-32A0A0A0MS00 114 aa1.45□□□□□ -2.18
USP40-204ENST00000427947 SPAARA0A1B0GVQ0 90 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms