RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 FAM104AQ969W3 186 aa9.82□□□□□ -0.84
CHCHD3-202ENST00000423635 TMEM18Q96B42 140 aa9.82□□□□□ -0.84
CHCHD3-202ENST00000423635 BORCS7Q96B45 105 aa9.82□□□□□ -0.84
CHCHD3-202ENST00000423635 KIR2DL4Q99706 377 aa9.82□□□□□ -0.84
CHCHD3-202ENST00000423635 A0A1B0GUT8 65 aa9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 PPP1R17O96001 155 aa9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 TAGLN2P37802 199 aaKnown RBP9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 SUMO2P61956 95 aaKnown RBP9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 KIAA0087Q14695 138 aa9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 C9orf129Q5T035 196 aaKnown RBP9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 AMN1Q8IY45 258 aa9.81□□□□□ -0.84
CHCHD3-202ENST00000423635 NUPR1O60356 82 aa9.8□□□□□ -0.84
CHCHD3-202ENST00000423635 NRACQ8N912 160 aa9.8□□□□□ -0.84
CHCHD3-202ENST00000423635 TRBV30A0A0K0K1B3 111 aa9.79□□□□□ -0.84
CHCHD3-202ENST00000423635 NDUFC2-KCTD14E9PQ53 114 aa9.79□□□□□ -0.84
CHCHD3-202ENST00000423635 SMKR1H3BMG3 65 aa9.79□□□□□ -0.84
CHCHD3-202ENST00000423635 TYMSOSQ8TAI1 123 aa9.79□□□□□ -0.84
CHCHD3-202ENST00000423635 HIGD1CA8MV81 97 aa9.78□□□□□ -0.84
CHCHD3-202ENST00000423635 CRYGAP11844 174 aa9.78□□□□□ -0.84
CHCHD3-202ENST00000423635 TPRXLQ17RH7 258 aa9.78□□□□□ -0.84
CHCHD3-202ENST00000423635 PPP1R2P9O14990 202 aa9.77□□□□□ -0.85
CHCHD3-202ENST00000423635 CDIP1Q9H305 208 aa9.77□□□□□ -0.85
CHCHD3-202ENST00000423635 MRPS36P82909 103 aaKnown RBP9.76□□□□□ -0.85
CHCHD3-202ENST00000423635 CTDSP1Q9GZU7 261 aa9.76□□□□□ -0.85
CHCHD3-202ENST00000423635 RPL39P62891 51 aaKnown RBP9.75□□□□□ -0.85
CHCHD3-202ENST00000423635 TMEM250H0YL14 139 aa9.74□□□□□ -0.85
CHCHD3-202ENST00000423635 SPANXA1Q9NS26 97 aa9.74□□□□□ -0.85
CHCHD3-202ENST00000423635 C22orf24Q9Y442 160 aa9.74□□□□□ -0.85
CHCHD3-202ENST00000423635 TCAPO15273 167 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 RPL32P62910 135 aaKnown RBP9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 HBBP68871 147 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 LBHQ53QV2 105 aaPredicted RBP9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 C2orf82Q6UX34 121 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 RETNLBQ9BQ08 111 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 C20orf78Q9BR46 151 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 CRCT1Q9UGL9 99 aa9.73□□□□□ -0.85
CHCHD3-202ENST00000423635 TRBV24-1A0A075B6N3 115 aa9.72□□□□□ -0.85
CHCHD3-202ENST00000423635 TGIF2-C20orf24A0A0A6YYL0 155 aa9.72□□□□□ -0.85
CHCHD3-202ENST00000423635 RPL28P46779 137 aaKnown RBP9.72□□□□□ -0.85
CHCHD3-202ENST00000423635 PACRGQ96M98 296 aaPredicted RBP9.72□□□□□ -0.85
CHCHD3-202ENST00000423635 IFITM10A6NMD0 228 aa9.71□□□□□ -0.86
CHCHD3-202ENST00000423635 RIGQ13278 110 aa9.71□□□□□ -0.86
CHCHD3-202ENST00000423635 RGS21Q2M5E4 152 aa9.71□□□□□ -0.86
CHCHD3-202ENST00000423635 IGLV7-46A0A075B6I9 117 aa9.7□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC00862A6NCI5 91 aa9.7□□□□□ -0.86
CHCHD3-202ENST00000423635 KRTAP13-2Q52LG2 175 aa9.7□□□□□ -0.86
CHCHD3-202ENST00000423635 ZNF727A8MUV8 499 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 BCE1O60756 84 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 CTAG1AP78358 180 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 MRPL51Q4U2R6 128 aaKnown RBP9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC00242Q5T6M2 205 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 FAM104BQ5XKR9 115 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 OSTCQ9NRP0 149 aa9.69□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC01561Q8N1V8 128 aa9.68□□□□□ -0.86
CHCHD3-202ENST00000423635 ANAPC11Q9NYG5 84 aa9.68□□□□□ -0.86
CHCHD3-202ENST00000423635 TP73-AS1Q9UF72 201 aa9.68□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC00173Q6ZV60 143 aa9.67□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC01551Q86U37 167 aa9.67□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC00304Q8N9R0 145 aa9.67□□□□□ -0.86
CHCHD3-202ENST00000423635 BATF3Q9NR55 127 aa9.66□□□□□ -0.86
CHCHD3-202ENST00000423635 TNFRSF6BO95407 300 aa9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 FAM229BQ4G0N7 80 aa9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 MRPL55Q7Z7F7 128 aaKnown RBP9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 LINC00469Q8N7U9 141 aa9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 SMIM2Q9BVW6 85 aa9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 V9GYV3 84 aa9.65□□□□□ -0.86
CHCHD3-202ENST00000423635 CKS2P33552 79 aa9.64□□□□□ -0.87
CHCHD3-202ENST00000423635 XAGE1AQ9HD64 81 aa9.64□□□□□ -0.87
CHCHD3-202ENST00000423635 PYGO1Q9Y3Y4 419 aa9.64□□□□□ -0.87
CHCHD3-202ENST00000423635 IFI27P40305 119 aaPredicted RBP9.63□□□□□ -0.87
CHCHD3-202ENST00000423635 LINC01547P58512 204 aaPredicted RBP9.63□□□□□ -0.87
CHCHD3-202ENST00000423635 SLC51BQ86UW2 128 aa9.63□□□□□ -0.87
CHCHD3-202ENST00000423635 CEBPGP53567 150 aa9.62□□□□□ -0.87
CHCHD3-202ENST00000423635 KRTAP13-1Q8IUC0 172 aa9.62□□□□□ -0.87
CHCHD3-202ENST00000423635 PPDPFQ9H3Y8 114 aa9.62□□□□□ -0.87
CHCHD3-202ENST00000423635 NAT8BQ9UHF3 227 aa9.62□□□□□ -0.87
CHCHD3-202ENST00000423635 IGLV4-3A0A075B6K6 122 aa9.61□□□□□ -0.87
CHCHD3-202ENST00000423635 CKS1BP61024 79 aa9.61□□□□□ -0.87
CHCHD3-202ENST00000423635 SMIM7Q9BQ49 75 aa9.61□□□□□ -0.87
CHCHD3-202ENST00000423635 PRSS2P07478 247 aa9.6□□□□□ -0.87
CHCHD3-202ENST00000423635 Q6ZN92 141 aa9.6□□□□□ -0.87
CHCHD3-202ENST00000423635 TMEM141Q96I45 108 aa9.6□□□□□ -0.87
CHCHD3-202ENST00000423635 LINC00167Q96N53 147 aa9.6□□□□□ -0.87
CHCHD3-202ENST00000423635 FAM74A3Q4VXF1 159 aa9.59□□□□□ -0.87
CHCHD3-202ENST00000423635 C6orf226Q5I0X4 101 aa9.59□□□□□ -0.87
CHCHD3-202ENST00000423635 Q8IZM0 81 aa9.59□□□□□ -0.87
CHCHD3-202ENST00000423635 RPL37AP8A6NKH3 93 aa9.58□□□□□ -0.88
CHCHD3-202ENST00000423635 D6R8Y8 96 aa9.58□□□□□ -0.88
CHCHD3-202ENST00000423635 IGKV2D-26A0A0A0MRZ7 120 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 A0A1B0GW15 77 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 NPYP01303 97 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 BLOC1S1P78537 153 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 TEX43Q6ZNM6 134 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 EIF5A2Q9GZV4 153 aaKnown RBP9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 TOMM7Q9P0U1 55 aa9.57□□□□□ -0.88
CHCHD3-202ENST00000423635 SMIM27A0A1W2PRY6 76 aa9.56□□□□□ -0.88
CHCHD3-202ENST00000423635 RAB5AP20339 215 aa9.56□□□□□ -0.88
CHCHD3-202ENST00000423635 ASB16-AS1Q495Z4 193 aa9.56□□□□□ -0.88
CHCHD3-202ENST00000423635 ALKBH7Q9BT30 221 aaPredicted RBP9.56□□□□□ -0.88
CHCHD3-202ENST00000423635 LCE2BO14633 110 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms