RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SLPIP03973 132 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 MRGPRG-AS1Q2M3A8 158 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 C1orf134Q5TEV5 83 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 ZFAND3Q9H8U3 227 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 Q6JHZ5 121 aa5.08□□□□□ -1.6
SCN1A-204ENST00000423058 COL27A1Q8IZC6 1860 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-204ENST00000423058 CHCHD7Q9BUK0 85 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 Q8IZM0 81 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 LINC01006Q8NI28 216 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 C20orf173Q96LM9 149 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 C19orf84I3L1E1 186 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 ZNF73O43830 326 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-204ENST00000423058 Q6Q795 121 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 ZNF702PQ9H963 129 aa5.07□□□□□ -1.6
SCN1A-204ENST00000423058 LOC100131303A0A0U1RQF7 123 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 IGLV2-14P01704 120 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 EIF4EBP1Q13541 118 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-204ENST00000423058 LINC00959A0A1B0GUT2 108 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 RETNQ9HD89 108 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 WFDC10AQ9H1F0 79 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 TRBV7-6A0A0J9YX20 115 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 MYO9AB2RTY4 2548 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 EBI3Q14213 229 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 FAM30AQ9NZY2 134 aa5.06□□□□□ -1.6
SCN1A-204ENST00000423058 TRBV27A0A0K0K1C4 114 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 TP73-AS1Q9UF72 201 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 ZNF22P17026 224 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-204ENST00000423058 Q6ZQY7 126 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 MBD6Q96DN6 1003 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 TRIAP1O43715 76 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 C11orf71Q6IPW1 123 aa5.05□□□□□ -1.6
SCN1A-204ENST00000423058 ZNF80P51504 273 aaPredicted RBP5.05□□□□□ -1.6
SCN1A-204ENST00000423058 LINC01556Q5JQF7 62 aa5.04□□□□□ -1.6
SCN1A-204ENST00000423058 C1orf137Q5JT78 98 aa5.04□□□□□ -1.6
SCN1A-204ENST00000423058 GDF5OSQ5U4N7 250 aa5.04□□□□□ -1.6
SCN1A-204ENST00000423058 EGFEM1PQ0D2K5 195 aa5.04□□□□□ -1.6
SCN1A-204ENST00000423058 SMIM11BQ8TCY0 68 aa5.04□□□□□ -1.6
SCN1A-204ENST00000423058 IGHV6-1A0A0B4J1U7 121 aa5.03□□□□□ -1.6
SCN1A-204ENST00000423058 A0A0U1RQV1 116 aa5.03□□□□□ -1.6
SCN1A-204ENST00000423058 SNURFQ9Y675 71 aa5.03□□□□□ -1.6
SCN1A-204ENST00000423058 OXLD1Q5BKU9 147 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 C2orf48Q96LS8 159 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 CYSRT1A8MQ03 144 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 TTTY13Q9BZ97 58 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 PTH2Q96A98 100 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 A0A1W2PNU3 283 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-204ENST00000423058 IGLV2-8P01709 118 aa5.02□□□□□ -1.61
SCN1A-204ENST00000423058 FAM229AH3BQW9 127 aa5.01□□□□□ -1.61
SCN1A-204ENST00000423058 TSHBP01222 138 aa5.01□□□□□ -1.61
SCN1A-204ENST00000423058 FRMD6-AS1P0C7T7 363 aa5.01□□□□□ -1.61
SCN1A-204ENST00000423058 NUPR1O60356 82 aa5.01□□□□□ -1.61
SCN1A-204ENST00000423058 Q9BRP9 147 aa5.01□□□□□ -1.61
SCN1A-204ENST00000423058 IGLV2-11P01706 119 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 PROK1P58294 105 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 C6orf223Q8N319 242 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 FN1P02751 2386 aaKnown RBP5□□□□□ -1.61
SCN1A-204ENST00000423058 KLLNB2CW77 178 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 C22orf34Q6ZV56 151 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 CSDC2Q9Y534 153 aaKnown RBP5□□□□□ -1.61
SCN1A-204ENST00000423058 TTC28Q96AY4 2481 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 LINC00526Q96FQ7 95 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 TRAV7A0A075B6U4 112 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 IGLV1-40P01703 118 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 PRR4Q16378 134 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 NRACQ8N912 160 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 CDC42SE2Q9NRR3 84 aa5□□□□□ -1.61
SCN1A-204ENST00000423058 LINC01547P58512 204 aaPredicted RBP4.99□□□□□ -1.61
SCN1A-204ENST00000423058 EDN2P20800 178 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 LINC00208Q96KT6 92 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 C16orf95Q9H693 158 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 Q8N814 137 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 hDV103S1A0JD37 113 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 MSMPQ1L6U9 139 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 NTM-AS1Q6ZSK4 140 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 RNASE3P12724 160 aaKnown RBP4.98□□□□□ -1.61
SCN1A-204ENST00000423058 C7orf65Q6ZTY9 151 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 C2CD3Q4AC94 2353 aa4.98□□□□□ -1.61
SCN1A-204ENST00000423058 COX7CP15954 63 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 CELA1Q9UNI1 258 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 H0Y9P7 68 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 MT-ATP8P03928 68 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 C18orf65Q6ZTR6 163 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 F8P00451 2351 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 Q8N2B8 174 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 RETNLBQ9BQ08 111 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 C10orf99Q6UWK7 81 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 C11orf1Q9H5F2 150 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 PLA2G2EQ9NZK7 142 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 A0A1B0GW54 56 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 PMAIP1Q13794 54 aa4.97□□□□□ -1.61
SCN1A-204ENST00000423058 SPINK1P00995 79 aa4.96□□□□□ -1.61
SCN1A-204ENST00000423058 SMIM26A0A096LP01 95 aa4.96□□□□□ -1.61
SCN1A-204ENST00000423058 IGLV1-51P01701 117 aa4.96□□□□□ -1.62
SCN1A-204ENST00000423058 CRIP1P50238 77 aa4.96□□□□□ -1.62
SCN1A-204ENST00000423058 LINC01561Q8N1V8 128 aa4.96□□□□□ -1.62
SCN1A-204ENST00000423058 Q8N6K4 173 aa4.96□□□□□ -1.62
SCN1A-204ENST00000423058 CNFNQ9BYD5 112 aa4.96□□□□□ -1.62
SCN1A-204ENST00000423058 Q6ZTC4 211 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 SBSPONQ8IVN8 264 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 TRBV10-3A0A0K0K1G6 114 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms