RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 OXTP01178 125 aa8.35□□□□□ -1.07
LINC00339-202ENST00000416769 COA6Q5JTJ3 125 aaKnown RBP8.35□□□□□ -1.07
LINC00339-202ENST00000416769 DGAT2L7PQ6IED9 249 aa8.35□□□□□ -1.07
LINC00339-202ENST00000416769 UBE2WQ96B02 151 aa8.35□□□□□ -1.07
LINC00339-202ENST00000416769 TMEM101Q96IK0 257 aa8.35□□□□□ -1.07
LINC00339-202ENST00000416769 SPANXA1Q9NS26 97 aa8.35□□□□□ -1.07
LINC00339-202ENST00000416769 IGLV4-60A0A075B6I1 120 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 PANO1I0J062 215 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 NUPR1O60356 82 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 HSBP1O75506 76 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 NPSP0C0P6 89 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 NDUFA6P56556 154 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 LINC00310P59036 64 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 Q8N976 141 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 CDC42SE2Q9NRR3 84 aa8.34□□□□□ -1.07
LINC00339-202ENST00000416769 A0A096LNJ9 63 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 HBDP02042 147 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 ANGP03950 147 aaKnown RBP8.33□□□□□ -1.08
LINC00339-202ENST00000416769 MT1HL1P0DM35 61 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 MRPS36P82909 103 aaKnown RBP8.33□□□□□ -1.08
LINC00339-202ENST00000416769 ERASQ7Z444 233 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 ZNF664Q8N3J9 261 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 OR5A1Q8NGJ0 315 aa8.33□□□□□ -1.08
LINC00339-202ENST00000416769 IGIPA6NJ69 53 aa8.32□□□□□ -1.08
LINC00339-202ENST00000416769 RPL37AP61513 92 aaKnown RBP8.32□□□□□ -1.08
LINC00339-202ENST00000416769 PDZD11Q5EBL8 140 aa8.32□□□□□ -1.08
LINC00339-202ENST00000416769 TMEM141Q96I45 108 aa8.32□□□□□ -1.08
LINC00339-202ENST00000416769 SCGB3A1Q96QR1 104 aa8.32□□□□□ -1.08
LINC00339-202ENST00000416769 TIMM17AQ99595 171 aa8.32□□□□□ -1.08
LINC00339-202ENST00000416769 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.32□□□□□ -1.08
LINC00339-202ENST00000416769 LRP2P98164 4655 aa8.31□□□□□ -1.08
LINC00339-202ENST00000416769 PMCHL1Q16048 86 aa8.31□□□□□ -1.08
LINC00339-202ENST00000416769 FAM19A2Q8N3H0 131 aa8.31□□□□□ -1.08
LINC00339-202ENST00000416769 FAM104AQ969W3 186 aa8.31□□□□□ -1.08
LINC00339-202ENST00000416769 PRR34Q9NV39 138 aa8.31□□□□□ -1.08
LINC00339-202ENST00000416769 IGLV4-3A0A075B6K6 122 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 ODF1Q14990 250 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 PAPPA-AS1Q5QFB9 102 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 ENHOQ6UWT2 76 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 LINC00269Q8N2A0 174 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 RNF213Q63HN8 5207 aa8.3□□□□□ -1.08
LINC00339-202ENST00000416769 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.29□□□□□ -1.08
LINC00339-202ENST00000416769 ATP5LO75964 103 aa8.29□□□□□ -1.08
LINC00339-202ENST00000416769 S100A6P06703 90 aa8.29□□□□□ -1.08
LINC00339-202ENST00000416769 REG3AQ06141 175 aa8.29□□□□□ -1.08
LINC00339-202ENST00000416769 RMI2Q96E14 147 aa8.29□□□□□ -1.08
LINC00339-202ENST00000416769 OPRPNQ99935 248 aaPredicted RBP8.29□□□□□ -1.08
LINC00339-202ENST00000416769 COX11Q9Y6N1 276 aa8.29□□□□□ -1.08
LINC00339-202ENST00000416769 TNXBP22105 4242 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 TRAV8-4A0A0B4J246 113 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 USP17L23D6RBM5 183 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 CCL25O15444 150 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 LEPROTL1O95214 131 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 CRPP02741 224 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 PRSS1P07477 247 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 MIAQ16674 131 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 Q6ZN92 141 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 Q6ZUT4 128 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 AMELXQ99217 191 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 VCX2Q9H322 139 aa8.28□□□□□ -1.08
LINC00339-202ENST00000416769 CLPSL2Q6UWE3 100 aa8.27□□□□□ -1.09
LINC00339-202ENST00000416769 TEX43Q6ZNM6 134 aa8.27□□□□□ -1.09
LINC00339-202ENST00000416769 PACRGQ96M98 296 aaPredicted RBP8.27□□□□□ -1.09
LINC00339-202ENST00000416769 LINC00959A0A1B0GUT2 108 aa8.26□□□□□ -1.09
LINC00339-202ENST00000416769 SS18Q15532 418 aa8.26□□□□□ -1.09
LINC00339-202ENST00000416769 RNASE13Q5GAN3 156 aaKnown RBP8.26□□□□□ -1.09
LINC00339-202ENST00000416769 IFI27L1Q96BM0 104 aa8.26□□□□□ -1.09
LINC00339-202ENST00000416769 HSPB8Q9UJY1 196 aa8.26□□□□□ -1.09
LINC00339-202ENST00000416769 IGKV3OR2-268A0A0C4DH90 116 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 C5orf52A6NGY3 159 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 FABP4P15090 132 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 SNRPEP62304 92 aaKnown RBP8.25□□□□□ -1.09
LINC00339-202ENST00000416769 PMVKQ15126 192 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 LINC00173Q6ZV60 143 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 C2orf88Q9BSF0 95 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 C1orf43Q9BWL3 253 aa8.25□□□□□ -1.09
LINC00339-202ENST00000416769 IFITM10A6NMD0 228 aa8.24□□□□□ -1.09
LINC00339-202ENST00000416769 C21orf62-AS1Q17RA5 79 aa8.24□□□□□ -1.09
LINC00339-202ENST00000416769 ZC2HC1BQ5TFG8 222 aa8.24□□□□□ -1.09
LINC00339-202ENST00000416769 KRTAP26-1Q6PEX3 210 aa8.24□□□□□ -1.09
LINC00339-202ENST00000416769 CST9LQ9H4G1 147 aa8.24□□□□□ -1.09
LINC00339-202ENST00000416769 TRAV13-1A0A0B4J241 112 aa8.23□□□□□ -1.09
LINC00339-202ENST00000416769 UBE2D1P51668 147 aa8.23□□□□□ -1.09
LINC00339-202ENST00000416769 FAM19A3Q7Z5A8 133 aa8.23□□□□□ -1.09
LINC00339-202ENST00000416769 HIST3H2BBQ8N257 126 aa8.23□□□□□ -1.09
LINC00339-202ENST00000416769 TRAV12-1A0A0B4J245 112 aa8.22□□□□□ -1.09
LINC00339-202ENST00000416769 CHTF8P0CG12 524 aa8.22□□□□□ -1.09
LINC00339-202ENST00000416769 S100A2P29034 98 aa8.22□□□□□ -1.09
LINC00339-202ENST00000416769 SDIM1Q6ZPB5 146 aa8.22□□□□□ -1.09
LINC00339-202ENST00000416769 CHCHD10Q8WYQ3 142 aaPredicted RBP8.22□□□□□ -1.09
LINC00339-202ENST00000416769 IGLV10-54A0A075B6I4 117 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 LORP23490 312 aaPredicted RBP8.21□□□□□ -1.1
LINC00339-202ENST00000416769 SEC11AP67812 179 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 C14orf177Q52M58 125 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 LINC00242Q5T6M2 205 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 CD164L2Q6UWJ8 174 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 C9orf163Q8N9P6 203 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 MAP1LC3CQ9BXW4 147 aa8.21□□□□□ -1.1
LINC00339-202ENST00000416769 TINCRA0A1B0GVN0 87 aa8.19□□□□□ -1.1
LINC00339-202ENST00000416769 GAGE12HA6NDE8 117 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms