RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 A0A096LPF7 62 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 K7EP13 123 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 ARMS2P0C7Q2 107 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 CTRLP40313 264 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 ZNF80P51504 273 aaPredicted RBP4.27□□□□□ -1.73
USP40-202ENST00000409945 Q1RN00 199 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 SMIM20Q8N5G0 67 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 PRO1933Q9H354 126 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 DNAH6Q9C0G6 4158 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 TRAV8-6A0A0B4J262 113 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 TRBV6-4A0A1B0GX49 114 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 OR5AL1P0C617 328 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 NTF3P20783 257 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 EVI2AP22794 236 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 KRTDAPP60985 99 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 ESRGQ1W209 222 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 ZFP2Q6ZN57 461 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 C6orf223Q8N319 242 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 FER1L6-AS1Q8NA97 138 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 ZNRF2Q8NHG8 242 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 VAMP8Q9BV40 100 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 CNFNQ9BYD5 112 aa4.27□□□□□ -1.73
USP40-202ENST00000409945 KMT2AQ03164 3969 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 IGKV3D-20A0A0C4DH25 116 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 H3BVH4 76 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 SMIM17P0DL12 118 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 PMCHL1Q16048 86 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 C4orf26Q17RF5 130 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 LYZL1Q6UWQ5 148 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 NIT1Q86X76 327 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 C10orf126Q8N4M7 172 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 C14orf144Q96I85 54 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 MAP1LC3AQ9H492 121 aa4.26□□□□□ -1.73
USP40-202ENST00000409945 TMSB15BA0A087X1C1 80 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 C3orf79P0CE67 100 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 IGLC6P0CF74 106 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 RNASE3P12724 160 aaKnown RBP4.25□□□□□ -1.73
USP40-202ENST00000409945 CFAP126Q5VTH2 177 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 FAM104BQ5XKR9 115 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 Q6ZR54 194 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 MRPL52Q86TS9 123 aaKnown RBP4.25□□□□□ -1.73
USP40-202ENST00000409945 FAM19A2Q8N3H0 131 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 C20orf202A1L168 122 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 M0R381 172 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 HIGD2BQ4VC39 106 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 FAM74A4Q5TZK3 123 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 SPANXN1Q5VSR9 72 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 LYPD5Q6UWN5 251 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 ORMDL3Q8N138 153 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 TMEM70Q9BUB7 260 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 TMEM191AQ9H0A3 160 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 HSPB8Q9UJY1 196 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 LAMTOR2Q9Y2Q5 125 aa4.25□□□□□ -1.73
USP40-202ENST00000409945 NACAE9PAV3 2078 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 IGHV3-73A0A0B4J1V6 119 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 IGHV1-24A0A0C4DH33 117 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 DLEU1O43261 78 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 LEPROTL1O95214 131 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 FA2HQ7L5A8 372 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 SLC25A29Q8N8R3 303 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 Q8N976 141 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 MIEN1Q9BRT3 115 aa4.24□□□□□ -1.73
USP40-202ENST00000409945 D6R8Y8 96 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 OR10AG1Q8NH19 301 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 ATP6V0E2Q8NHE4 81 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 PRELID3AQ96N28 172 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 AP1S3Q96PC3 154 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 GTSF1LQ9H1H1 148 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 TRBV10-1A0A0K0K1A3 114 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 RTL8CO15255 209 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 CKS2P33552 79 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 CACNG7P62955 275 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 ZNF56Q15929 161 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 MRPL51Q4U2R6 128 aaKnown RBP4.23□□□□□ -1.73
USP40-202ENST00000409945 AMN1Q8IY45 258 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 SIGMAR1Q99720 223 aa4.23□□□□□ -1.73
USP40-202ENST00000409945 SPANXB1Q9NS25 103 aaPredicted RBP4.23□□□□□ -1.73
USP40-202ENST00000409945 DNAH10Q8IVF4 4471 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 SYS1-DBNDD2H3BUS1 97 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 H7C1H1 209 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 PSCAO43653 123 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 CRYGDP07320 174 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 SPATA45Q537H7 98 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 LELP1Q5T871 98 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 VPS25Q9BRG1 176 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 UQCR10Q9UDW1 63 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 SS18L2Q9UHA2 77 aa4.22□□□□□ -1.73
USP40-202ENST00000409945 M0R143 59 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 CD164Q04900 197 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 LAGE3Q14657 143 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 TMEM97Q5BJF2 176 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 SPATA12Q7Z6I5 190 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 NXT2Q9NPJ8 142 aaKnown RBP4.21□□□□□ -1.74
USP40-202ENST00000409945 EPPK1P58107 5090 aaKnown RBP4.21□□□□□ -1.74
USP40-202ENST00000409945 LOC100131303A0A0U1RQF7 123 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 HBDP02042 147 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 DNAH10OSP0CZ25 163 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 IGLC3P0DOY3 106 aa4.21□□□□□ -1.74
USP40-202ENST00000409945 IFI27P40305 119 aaPredicted RBP4.21□□□□□ -1.74
USP40-202ENST00000409945 LINC00315P59091 139 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms