RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 NFE4Q86UQ8 179 aa2.53□□□□□ -2
RTN4-208ENST00000404909 PCP2Q8IVA1 136 aa2.53□□□□□ -2
RTN4-208ENST00000404909 UBE2WQ96B02 151 aa2.53□□□□□ -2
RTN4-208ENST00000404909 CDKN2A-AS1Q9UH64 79 aa2.53□□□□□ -2
RTN4-208ENST00000404909 LINC00588Q9Y4M8 146 aa2.53□□□□□ -2
RTN4-208ENST00000404909 TRAV8-3A0A0A6YYJ7 113 aa2.53□□□□□ -2
RTN4-208ENST00000404909 LINC00959A0A1B0GUT2 108 aa2.53□□□□□ -2
RTN4-208ENST00000404909 HERVK_113P63121 156 aa2.53□□□□□ -2
RTN4-208ENST00000404909 NUPR2A6NF83 97 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 CCL25O15444 150 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 CRPP02741 224 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 SEC11AP67812 179 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 SS18Q15532 418 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 SLC25A34Q6PIV7 304 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 C5orf38Q86SI9 138 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 UQCR10Q9UDW1 63 aa2.53□□□□□ -2.01
RTN4-208ENST00000404909 KLK5Q9Y337 293 aaPredicted RBP2.53□□□□□ -2.01
RTN4-208ENST00000404909 H3BRM9 83 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 DDTP30046 118 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 DYNC2H1Q8NCM8 4307 aaKnown RBP2.52□□□□□ -2.01
RTN4-208ENST00000404909 MIEN1Q9BRT3 115 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 TMEM223A0PJW6 202 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 E9PLD3 99 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 SIVA1O15304 175 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 COX8AP10176 69 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 CHCHD10Q8WYQ3 142 aaPredicted RBP2.52□□□□□ -2.01
RTN4-208ENST00000404909 APLNQ9ULZ1 77 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 LGALS3P17931 250 aaKnown RBP2.52□□□□□ -2.01
RTN4-208ENST00000404909 HNRNPA3P51991 378 aaKnown RBP2.52□□□□□ -2.01
RTN4-208ENST00000404909 Q9HAA7 133 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 MRPS16Q9Y3D3 137 aaKnown RBP2.52□□□□□ -2.01
RTN4-208ENST00000404909 CBY1Q9Y3M2 126 aa2.52□□□□□ -2.01
RTN4-208ENST00000404909 ZNF815PA8K554 130 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 J3QQQ9 107 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 K7EP13 123 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 TSPEAR-AS2P59090 65 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 LINC01556Q5JQF7 62 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 ENHOQ6UWT2 76 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 MAPKAPK5-AS1Q8N8E1 139 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 Q9H8V8 135 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 TOMM7Q9P0U1 55 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 IGLV5-45A0A087WSX0 123 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 IGHV1-58A0A0C4DH39 117 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 MALP21145 153 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 SCGB1D4Q6XE38 83 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 BOD1L2Q8IYS8 172 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 IGHV3OR16-9A0A0B4J2B5 98 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 GAGE12HA6NDE8 117 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 SMIM1B2RUZ4 78 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 PRR34Q9NV39 138 aa2.51□□□□□ -2.01
RTN4-208ENST00000404909 IGKV2D-24A0A075B6R9 120 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 MYMXA0A1B0GTQ4 84 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 COX7A2LO14548 114 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 LEPROTO15243 131 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 DNAH10OSP0CZ25 163 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 CD164L2Q6UWJ8 174 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 FAM19A3Q7Z5A8 133 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 MUC7Q8TAX7 377 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 PLEKHB2Q96CS7 222 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 A0A087WZ39 114 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 BATFQ16520 125 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 MIAQ16674 131 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 ZNF625Q96I27 306 aaPredicted RBP2.5□□□□□ -2.01
RTN4-208ENST00000404909 NDUFA12Q9UI09 145 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 DNAH1Q9P2D7 4330 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 C1orf43Q9BWL3 253 aa2.5□□□□□ -2.01
RTN4-208ENST00000404909 TRAV8-4A0A0B4J246 113 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 EREGO14944 169 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 FOXI1Q12951 378 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 C2orf91Q6ZV80 131 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 WWC2-AS2Q96NR7 200 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 UPK3BQ9BT76 320 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 KMT2AQ03164 3969 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 DNAH10Q8IVF4 4471 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 IGLV5-39A0A0G2JS06 123 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 A0A0U1RRA0 63 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 DLEU1O43261 78 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 PRSS2P07478 247 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 HINT1P49773 126 aaPredicted RBP2.49□□□□□ -2.01
RTN4-208ENST00000404909 C6orf226Q5I0X4 101 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 COX7B2Q8TF08 81 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 C10orf126Q8N4M7 172 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 ORAOV1Q8WV07 137 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 LINC00526Q96FQ7 95 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 IBA57-AS1B1ANH7 110 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 PSCAO43653 123 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 SRSF9Q13242 221 aaKnown RBP eCLIP2.49□□□□□ -2.01
RTN4-208ENST00000404909 HIST1H4GQ99525 98 aa2.49□□□□□ -2.01
RTN4-208ENST00000404909 VPS13DQ5THJ4 4388 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 M0R2N4 97 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 CKS1BP61024 79 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 C2orf82Q6UX34 121 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 KRTAP1-5Q9BYS1 174 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 A0A0J9YXY3 114 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 APOMO95445 188 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 GCSHP23434 173 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 HIGD2BQ4VC39 106 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 MEIG1Q5JSS6 88 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 LECT2O14960 151 aa2.48□□□□□ -2.01
RTN4-208ENST00000404909 NDUFA1O15239 70 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms