RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ESRGQ1W209 222 aa9.37□□□□□ -0.91
CCDC88C-204ENST00000389857 NANOS2P60321 138 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-204ENST00000389857 C22orf34Q6ZV56 151 aa9.37□□□□□ -0.91
CCDC88C-204ENST00000389857 REG3GQ6UW15 175 aa9.36□□□□□ -0.91
CCDC88C-204ENST00000389857 M0QXV9 152 aa9.36□□□□□ -0.91
CCDC88C-204ENST00000389857 WFDC10AQ9H1F0 79 aa9.36□□□□□ -0.91
CCDC88C-204ENST00000389857 MED13LQ71F56 2210 aa9.36□□□□□ -0.91
CCDC88C-204ENST00000389857 PRR4Q16378 134 aa9.36□□□□□ -0.91
CCDC88C-204ENST00000389857 PCDH15Q96QU1 1955 aa9.35□□□□□ -0.91
CCDC88C-204ENST00000389857 Q6ZPA2 131 aa9.35□□□□□ -0.91
CCDC88C-204ENST00000389857 Q8N6K4 173 aa9.35□□□□□ -0.91
CCDC88C-204ENST00000389857 CDC42SE2Q9NRR3 84 aa9.35□□□□□ -0.91
CCDC88C-204ENST00000389857 IGLV1-40P01703 118 aa9.35□□□□□ -0.91
CCDC88C-204ENST00000389857 CIRBP-AS1Q8TBR5 109 aa9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 CYSRT1A8MQ03 144 aa9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 RAI1Q7Z5J4 1906 aaPredicted RBP9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 PRYO14603 147 aa9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 C18orf65Q6ZTR6 163 aa9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 PLXNB1O43157 2135 aa9.34□□□□□ -0.91
CCDC88C-204ENST00000389857 TRAV7A0A075B6U4 112 aa9.33□□□□□ -0.92
CCDC88C-204ENST00000389857 POLR2KP53803 58 aaKnown RBP9.33□□□□□ -0.92
CCDC88C-204ENST00000389857 PRR9Q5T870 116 aa9.33□□□□□ -0.92
CCDC88C-204ENST00000389857 C2orf91Q6ZV80 131 aa9.32□□□□□ -0.92
CCDC88C-204ENST00000389857 EGFEM1PQ0D2K5 195 aa9.32□□□□□ -0.92
CCDC88C-204ENST00000389857 C1orf195Q5TG92 126 aa9.32□□□□□ -0.92
CCDC88C-204ENST00000389857 NTM-AS1Q6ZSK4 140 aa9.32□□□□□ -0.92
CCDC88C-204ENST00000389857 CHCHD7Q9BUK0 85 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 IGLV5-52A0A0A0MRZ9 124 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 MUC4Q99102 2169 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 SMIM26A0A096LP01 95 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 Q8N814 137 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 PRR14LQ5THK1 2151 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 C1orf137Q5JT78 98 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 HIVEP2P31629 2446 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 ARHGAP32A7KAX9 2087 aa9.31□□□□□ -0.92
CCDC88C-204ENST00000389857 GPR179Q6PRD1 2367 aa9.3□□□□□ -0.92
CCDC88C-204ENST00000389857 F8WDY8 70 aa9.3□□□□□ -0.92
CCDC88C-204ENST00000389857 Q6ZS46 218 aa9.3□□□□□ -0.92
CCDC88C-204ENST00000389857 TRBV7-6A0A0J9YX20 115 aa9.3□□□□□ -0.92
CCDC88C-204ENST00000389857 CCDC179H3BU77 68 aa9.29□□□□□ -0.92
CCDC88C-204ENST00000389857 CRIP3Q6Q6R5 217 aa9.29□□□□□ -0.92
CCDC88C-204ENST00000389857 POM121L12Q8N7R1 296 aa9.29□□□□□ -0.92
CCDC88C-204ENST00000389857 CELA1Q9UNI1 258 aa9.29□□□□□ -0.92
CCDC88C-204ENST00000389857 Q6Q795 121 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 IGHV6-1A0A0B4J1U7 121 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 YPEL4Q96NS1 127 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 PTPRQQ9UMZ3 2332 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 RETNQ9HD89 108 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 C11orf21Q9P2W6 132 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 LINC00208Q96KT6 92 aa9.28□□□□□ -0.92
CCDC88C-204ENST00000389857 CNFNQ9BYD5 112 aa9.27□□□□□ -0.93
CCDC88C-204ENST00000389857 TECTAO75443 2155 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 PRM2P04554 102 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 EXPH5Q8NEV8 1989 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 IGIPA6NJ69 53 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 UNQ6190/PRO20217Q6UXQ8 127 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 C6orf223Q8N319 242 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 X6R8D5 127 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 TRBV10-3A0A0K0K1G6 114 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 CPAMD8Q8IZJ3 1885 aa9.26□□□□□ -0.93
CCDC88C-204ENST00000389857 FSHBP01225 129 aa9.25□□□□□ -0.93
CCDC88C-204ENST00000389857 SORL1Q92673 2214 aa9.25□□□□□ -0.93
CCDC88C-204ENST00000389857 LINC00694P0DN24 101 aa9.24□□□□□ -0.93
CCDC88C-204ENST00000389857 LINC00242Q5T6M2 205 aa9.24□□□□□ -0.93
CCDC88C-204ENST00000389857 Q9BRP9 147 aa9.24□□□□□ -0.93
CCDC88C-204ENST00000389857 OXLD1Q5BKU9 147 aa9.24□□□□□ -0.93
CCDC88C-204ENST00000389857 XGP55808 180 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 PLA2G2AP14555 144 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 LINC01547P58512 204 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 PMAIP1Q13794 54 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 OTOGLQ3ZCN5 2332 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 LRP4O75096 1905 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 FAM208BQ5VWN6 2430 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 SMIM1B2RUZ4 78 aa9.23□□□□□ -0.93
CCDC88C-204ENST00000389857 LINC01556Q5JQF7 62 aa9.22□□□□□ -0.93
CCDC88C-204ENST00000389857 C9orf116Q5BN46 136 aaPredicted RBP9.22□□□□□ -0.93
CCDC88C-204ENST00000389857 COX6A2Q02221 97 aa9.21□□□□□ -0.93
CCDC88C-204ENST00000389857 RETNLBQ9BQ08 111 aa9.21□□□□□ -0.93
CCDC88C-204ENST00000389857 LIMD2Q9BT23 127 aa9.21□□□□□ -0.93
CCDC88C-204ENST00000389857 A0A087WYN8 130 aa9.21□□□□□ -0.93
CCDC88C-204ENST00000389857 H0Y9P7 68 aa9.21□□□□□ -0.94
CCDC88C-204ENST00000389857 GAS8-AS1O95177 125 aa9.2□□□□□ -0.94
CCDC88C-204ENST00000389857 CSDC2Q9Y534 153 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-204ENST00000389857 TRBV7-7A0A0K0K1E9 115 aa9.2□□□□□ -0.94
CCDC88C-204ENST00000389857 CRIP2P52943 208 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-204ENST00000389857 IGLV1-51P01701 117 aa9.19□□□□□ -0.94
CCDC88C-204ENST00000389857 FHL2Q14192 279 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 PRRC2AP48634 2157 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 ODF3L2Q3SX64 289 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 LINC00575Q6W349 94 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 C2orf48Q96LS8 159 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 PTPRSQ13332 1948 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 C1orf134Q5TEV5 83 aa9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 SONP18583 2426 aaKnown RBP9.18□□□□□ -0.94
CCDC88C-204ENST00000389857 LINC01561Q8N1V8 128 aa9.17□□□□□ -0.94
CCDC88C-204ENST00000389857 C16orf95Q9H693 158 aa9.17□□□□□ -0.94
CCDC88C-204ENST00000389857 PCOTHQ58A44 107 aa9.17□□□□□ -0.94
CCDC88C-204ENST00000389857 SOSTDC1Q6X4U4 206 aa9.17□□□□□ -0.94
CCDC88C-204ENST00000389857 AGRNO00468 2067 aa9.17□□□□□ -0.94
CCDC88C-204ENST00000389857 IGLV4-60A0A075B6I1 120 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms