RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 IGKV2D-28P01615 120 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 PROK2Q9HC23 129 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 COL11A2P13942 1736 aaPredicted RBP6.49□□□□□ -1.37
LIG3-202ENST00000378526 PLA2G1BP04054 148 aaKnown RBP6.49□□□□□ -1.37
LIG3-202ENST00000378526 IGLV4-69A0A075B6H9 119 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 SSBP3-AS1Q7Z2R9 100 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 ZNF702PQ9H963 129 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 LTBP1Q14766 1721 aa6.49□□□□□ -1.37
LIG3-202ENST00000378526 SLURP1P55000 103 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 Q6ZS46 218 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 WDR90Q96KV7 1748 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 LOC100131303A0A0U1RQF7 123 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 PRSS33Q8NF86 280 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 TNFRSF13BO14836 293 aaPredicted RBP6.48□□□□□ -1.37
LIG3-202ENST00000378526 MYCNOSP40205 109 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 CRIPTQ9P021 101 aa6.48□□□□□ -1.37
LIG3-202ENST00000378526 ZNF843Q8N446 348 aa6.47□□□□□ -1.37
LIG3-202ENST00000378526 C6orf48Q9UBA6 75 aa6.47□□□□□ -1.37
LIG3-202ENST00000378526 TRAV10A0A0B4J240 114 aa6.47□□□□□ -1.37
LIG3-202ENST00000378526 PRLHP81277 87 aa6.47□□□□□ -1.37
LIG3-202ENST00000378526 CNFNQ9BYD5 112 aa6.46□□□□□ -1.37
LIG3-202ENST00000378526 LINC00846Q9NV44 126 aa6.46□□□□□ -1.37
LIG3-202ENST00000378526 IGHV6-1A0A0B4J1U7 121 aa6.46□□□□□ -1.37
LIG3-202ENST00000378526 ELOF1P60002 83 aaKnown RBP6.46□□□□□ -1.37
LIG3-202ENST00000378526 C9orf116Q5BN46 136 aaPredicted RBP6.46□□□□□ -1.37
LIG3-202ENST00000378526 SBSPONQ8IVN8 264 aa6.46□□□□□ -1.38
LIG3-202ENST00000378526 LUZP6Q538Z0 58 aa6.46□□□□□ -1.38
LIG3-202ENST00000378526 Q6ZSR3 168 aa6.46□□□□□ -1.38
LIG3-202ENST00000378526 PRR15Q8IV56 129 aa6.46□□□□□ -1.38
LIG3-202ENST00000378526 VWCEQ96DN2 955 aa6.46□□□□□ -1.38
LIG3-202ENST00000378526 WIPF1O43516 503 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 TSHBP01222 138 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 CRIP2P52943 208 aaPredicted RBP6.45□□□□□ -1.38
LIG3-202ENST00000378526 A0A087WYN8 130 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 SPINK1P00995 79 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 RNF223E7ERA6 249 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 IGLV9-49A0A0B4J1Y8 123 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 Q0VFX4 171 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 LY6HO94772 140 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 P0C879 139 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 UQCR11O14957 56 aa6.45□□□□□ -1.38
LIG3-202ENST00000378526 NHLRC4P0CG21 123 aaPredicted RBP6.45□□□□□ -1.38
LIG3-202ENST00000378526 DEFB136Q30KP8 78 aa6.44□□□□□ -1.38
LIG3-202ENST00000378526 MRGPRG-AS1Q2M3A8 158 aa6.44□□□□□ -1.38
LIG3-202ENST00000378526 TTC28Q96AY4 2481 aa6.44□□□□□ -1.38
LIG3-202ENST00000378526 IGLV2-14P01704 120 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 LINC01554Q52M75 96 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 CTSZQ9UBR2 303 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 RSPO1Q2MKA7 263 aaPredicted RBP6.43□□□□□ -1.38
LIG3-202ENST00000378526 REG3GQ6UW15 175 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 LINC01548A6NM66 108 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 KRTAP27-1Q3LI81 207 aa6.43□□□□□ -1.38
LIG3-202ENST00000378526 ITGBL1O95965 494 aaPredicted RBP6.42□□□□□ -1.38
LIG3-202ENST00000378526 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.42□□□□□ -1.38
LIG3-202ENST00000378526 DEFB135Q30KP9 77 aa6.42□□□□□ -1.38
LIG3-202ENST00000378526 MAP6D1Q9H9H5 199 aa6.42□□□□□ -1.38
LIG3-202ENST00000378526 MYO18BQ8IUG5 2567 aa6.42□□□□□ -1.38
LIG3-202ENST00000378526 ZNF462Q96JM2 2506 aa6.42□□□□□ -1.38
LIG3-202ENST00000378526 ANKHD1Q8IWZ3 2542 aaKnown RBP6.41□□□□□ -1.38
LIG3-202ENST00000378526 ODF3L1Q8IXM7 274 aa6.41□□□□□ -1.38
LIG3-202ENST00000378526 C11orf45Q8TAV5 145 aa6.41□□□□□ -1.38
LIG3-202ENST00000378526 Q96MF0 132 aa6.41□□□□□ -1.38
LIG3-202ENST00000378526 IGIPA6NJ69 53 aa6.41□□□□□ -1.38
LIG3-202ENST00000378526 RITA1Q96K30 269 aa6.4□□□□□ -1.38
LIG3-202ENST00000378526 POLR2KP53803 58 aaKnown RBP6.4□□□□□ -1.38
LIG3-202ENST00000378526 SMIM29Q86T20 159 aa6.4□□□□□ -1.38
LIG3-202ENST00000378526 PCSK5Q92824 1860 aa6.4□□□□□ -1.39
LIG3-202ENST00000378526 CRIP1P50238 77 aa6.4□□□□□ -1.39
LIG3-202ENST00000378526 Q6ZTI0 123 aa6.4□□□□□ -1.39
LIG3-202ENST00000378526 LINC00959A0A1B0GUT2 108 aa6.4□□□□□ -1.39
LIG3-202ENST00000378526 FAM19A4Q96LR4 140 aa6.39□□□□□ -1.39
LIG3-202ENST00000378526 H3BS24 57 aa6.39□□□□□ -1.39
LIG3-202ENST00000378526 TRAV22A0A0B4J277 110 aa6.39□□□□□ -1.39
LIG3-202ENST00000378526 LELP1Q5T871 98 aa6.39□□□□□ -1.39
LIG3-202ENST00000378526 RPL37AP8A6NKH3 93 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 LOC101927531A0A1B0GV80 90 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 EGFEM1PQ0D2K5 195 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 SMAD5-AS1Q9Y6J3 95 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 ACANP16112 2415 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 LINC01561Q8N1V8 128 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 KPRPQ5T749 579 aaPredicted RBP6.38□□□□□ -1.39
LIG3-202ENST00000378526 CDC42SE2Q9NRR3 84 aa6.38□□□□□ -1.39
LIG3-202ENST00000378526 Q9UF83 564 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 Q9BRP9 147 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 IGFL3Q6UXB1 125 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 LINC00336Q6ZUF6 198 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 MYO9AB2RTY4 2548 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 IGLV2-11P01706 119 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 MSMPQ1L6U9 139 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 CIRBP-AS1Q8TBR5 109 aa6.37□□□□□ -1.39
LIG3-202ENST00000378526 HIVEP2P31629 2446 aa6.36□□□□□ -1.39
LIG3-202ENST00000378526 MIR22HGQ0VDD5 57 aa6.36□□□□□ -1.39
LIG3-202ENST00000378526 UNQ9165/PRO28630Q6UXU0 137 aa6.36□□□□□ -1.39
LIG3-202ENST00000378526 K7EQG2 157 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 A0A087WSZ3 146 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 E7EUB6 86 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 LOC110117498A0A087WWA1 95 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 ZNF503-AS2A6NEH8 195 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 SMIM1B2RUZ4 78 aa6.35□□□□□ -1.39
LIG3-202ENST00000378526 CYSRT1A8MQ03 144 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms