RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 HILS1P60008 231 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 LINC00322Q6ZN03 302 aaPredicted RBP6.64□□□□□ -1.35
SYNE1-209ENST00000367257 LINC00467Q9BRT7 94 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 CDKN2A-AS1Q9UH64 79 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 UBE2D1P51668 147 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 BRWD1-AS2P59051 145 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 C11orf45Q8TAV5 145 aa6.64□□□□□ -1.35
SYNE1-209ENST00000367257 ACACBO00763 2458 aa6.63□□□□□ -1.35
SYNE1-209ENST00000367257 BRI3O95415 125 aa6.63□□□□□ -1.35
SYNE1-209ENST00000367257 ZNF580Q9UK33 172 aa6.63□□□□□ -1.35
SYNE1-209ENST00000367257 GRNP28799 593 aaKnown RBP6.63□□□□□ -1.35
SYNE1-209ENST00000367257 LINC00474Q9P2X8 69 aa6.63□□□□□ -1.35
SYNE1-209ENST00000367257 DEFB135Q30KP9 77 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 KLLNB2CW77 178 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 CD164Q04900 197 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 A0A087WVE0 104 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 Q8IZM0 81 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 DNAJC9-AS1A6NH13 148 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 EDN2P20800 178 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 CRIP2P52943 208 aaPredicted RBP6.62□□□□□ -1.35
SYNE1-209ENST00000367257 SYCNQ0VAF6 134 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 LINC00269Q8N2A0 174 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 Q8N6K4 173 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 SHANK1Q9Y566 2161 aa6.62□□□□□ -1.35
SYNE1-209ENST00000367257 POLR2KP53803 58 aaKnown RBP6.61□□□□□ -1.35
SYNE1-209ENST00000367257 NRACQ8N912 160 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 A8MZ25 164 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 URB1-AS1Q96HZ7 61 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 PSMG3-AS1Q96PY0 264 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 IGLV4-69A0A075B6H9 119 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 PLAC8L1A1L4L8 177 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 PSPHP1O15172 72 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 LINC01561Q8N1V8 128 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 ARHGAP21Q5T5U3 1957 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 IGLV2-11P01706 119 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 LELP1Q5T871 98 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 Q6ZTI0 123 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 OTOGLQ3ZCN5 2332 aa6.61□□□□□ -1.35
SYNE1-209ENST00000367257 COX8CQ7Z4L0 72 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 TSHBP01222 138 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 PLA2G5P39877 138 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 ESRGQ1W209 222 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 TECTAO75443 2155 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 CRYGDP07320 174 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 SCXQ7RTU7 201 aa6.6□□□□□ -1.35
SYNE1-209ENST00000367257 TRAV10A0A0B4J240 114 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 CRIP3Q6Q6R5 217 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 FAM19A1Q7Z5A9 133 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 CCKP06307 115 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 PRYO14603 147 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 UBE2D4Q9Y2X8 147 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 LRCOL1A6NCL2 159 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 MSMPQ1L6U9 139 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 C7orf33Q8WU49 177 aa6.59□□□□□ -1.35
SYNE1-209ENST00000367257 PRO0461Q9UI25 63 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 CRIP1P50238 77 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 PCDH15Q96QU1 1955 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 C6orf99Q4VX62 202 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 Q8N9L7 120 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 C11orf71Q6IPW1 123 aa6.58□□□□□ -1.36
SYNE1-209ENST00000367257 Q6ZS46 218 aa6.57□□□□□ -1.36
SYNE1-209ENST00000367257 IGHV4-31P0DP07 118 aa6.57□□□□□ -1.36
SYNE1-209ENST00000367257 HIGD2AQ9BW72 106 aa6.57□□□□□ -1.36
SYNE1-209ENST00000367257 RPL28P46779 137 aaKnown RBP6.57□□□□□ -1.36
SYNE1-209ENST00000367257 Q6ZPA2 131 aa6.57□□□□□ -1.36
SYNE1-209ENST00000367257 LOC400499M0QZD8 3231 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 SLPIP03973 132 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 CEMP1Q6PRD7 247 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-209ENST00000367257 Q8NA96 180 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 MALRD1Q5VYJ5 2156 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 DEFB131BA0A096LNP1 70 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 BCE1O60756 84 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 PRR4Q16378 134 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 CELSR3Q9NYQ7 3312 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 NACAE9PAV3 2078 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 MED12LQ86YW9 2145 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 IGLV1-40P01703 118 aa6.56□□□□□ -1.36
SYNE1-209ENST00000367257 RNASE3P12724 160 aaKnown RBP6.56□□□□□ -1.36
SYNE1-209ENST00000367257 SMCPP49901 116 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-209ENST00000367257 CXCL6P80162 114 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 DSCAML1Q8TD84 2053 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 ZGRF1Q86YA3 2104 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 LINC00959A0A1B0GUT2 108 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 EGFEM1PQ0D2K5 195 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 TMEM131Q92545 1883 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 ZNF73O43830 326 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-209ENST00000367257 KIAA1549Q9HCM3 1950 aa6.55□□□□□ -1.36
SYNE1-209ENST00000367257 CSPG4Q6UVK1 2322 aa6.54□□□□□ -1.36
SYNE1-209ENST00000367257 TRBV10-3A0A0K0K1G6 114 aa6.54□□□□□ -1.36
SYNE1-209ENST00000367257 IGIPA6NJ69 53 aa6.54□□□□□ -1.36
SYNE1-209ENST00000367257 Q6ZQY7 126 aa6.54□□□□□ -1.36
SYNE1-209ENST00000367257 A0A1B0GW54 56 aa6.53□□□□□ -1.36
SYNE1-209ENST00000367257 SMIM11BQ8TCY0 68 aa6.53□□□□□ -1.36
SYNE1-209ENST00000367257 FAM19A4Q96LR4 140 aa6.53□□□□□ -1.36
SYNE1-209ENST00000367257 CDC42SE2Q9NRR3 84 aa6.53□□□□□ -1.36
SYNE1-209ENST00000367257 NTM-AS1Q6ZSK4 140 aa6.52□□□□□ -1.37
SYNE1-209ENST00000367257 LINC00336Q6ZUF6 198 aa6.52□□□□□ -1.37
SYNE1-209ENST00000367257 A0A087WZ39 114 aa6.52□□□□□ -1.37
SYNE1-209ENST00000367257 NHLRC4P0CG21 123 aaPredicted RBP6.52□□□□□ -1.37
SYNE1-209ENST00000367257 TMEM254Q8TBM7 123 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms