RNA–Protein interactions for RNA: ENST00000361545.9

CLIP2-202, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 1 (best) BASIC

Gene CLIP2, Length 5,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-202ENST00000361545 C7orf33Q8WU49 177 aa13.53□□□□□ -0.24
CLIP2-202ENST00000361545 UBE2D4Q9Y2X8 147 aa13.52□□□□□ -0.24
CLIP2-202ENST00000361545 ATG2AQ2TAZ0 1938 aa13.51□□□□□ -0.25
CLIP2-202ENST00000361545 CRIP2P52943 208 aaPredicted RBP13.51□□□□□ -0.25
CLIP2-202ENST00000361545 MTORP42345 2549 aa13.51□□□□□ -0.25
CLIP2-202ENST00000361545 C16orf95Q9H693 158 aa13.5□□□□□ -0.25
CLIP2-202ENST00000361545 POLR2KP53803 58 aaKnown RBP13.5□□□□□ -0.25
CLIP2-202ENST00000361545 CHKB-CPT1BH3BT56 60 aa13.5□□□□□ -0.25
CLIP2-202ENST00000361545 MRPS12O15235 138 aaKnown RBP13.5□□□□□ -0.25
CLIP2-202ENST00000361545 UBE2D3P61077 147 aa13.5□□□□□ -0.25
CLIP2-202ENST00000361545 UBE2D2P62837 147 aa13.5□□□□□ -0.25
CLIP2-202ENST00000361545 MT-ATP8P03928 68 aa13.49□□□□□ -0.25
CLIP2-202ENST00000361545 C6orf99Q4VX62 202 aa13.49□□□□□ -0.25
CLIP2-202ENST00000361545 SPANXB1Q9NS25 103 aaPredicted RBP13.49□□□□□ -0.25
CLIP2-202ENST00000361545 C5orf47Q569G3 176 aa13.48□□□□□ -0.25
CLIP2-202ENST00000361545 PPDPFQ9H3Y8 114 aa13.48□□□□□ -0.25
CLIP2-202ENST00000361545 NDUFC2O95298 119 aa13.48□□□□□ -0.25
CLIP2-202ENST00000361545 PDE6GP18545 87 aa13.47□□□□□ -0.25
CLIP2-202ENST00000361545 IGLV4-69A0A075B6H9 119 aa13.47□□□□□ -0.25
CLIP2-202ENST00000361545 Q6ZTC4 211 aa13.46□□□□□ -0.26
CLIP2-202ENST00000361545 PKD1L2Q7Z442 2459 aa13.46□□□□□ -0.26
CLIP2-202ENST00000361545 NDUFV3P56181 108 aaKnown RBP13.45□□□□□ -0.26
CLIP2-202ENST00000361545 POLQO75417 2590 aa13.45□□□□□ -0.26
CLIP2-202ENST00000361545 C1orf158Q8N1D5 194 aa13.45□□□□□ -0.26
CLIP2-202ENST00000361545 EXPH5Q8NEV8 1989 aa13.45□□□□□ -0.26
CLIP2-202ENST00000361545 WFDC9Q8NEX5 89 aa13.45□□□□□ -0.26
CLIP2-202ENST00000361545 TRAV23DV6A0A075B6W5 121 aa13.44□□□□□ -0.26
CLIP2-202ENST00000361545 RPL37AP8A6NKH3 93 aa13.44□□□□□ -0.26
CLIP2-202ENST00000361545 BPY2O14599 106 aa13.44□□□□□ -0.26
CLIP2-202ENST00000361545 YPEL4Q96NS1 127 aa13.44□□□□□ -0.26
CLIP2-202ENST00000361545 UBE2D1P51668 147 aa13.43□□□□□ -0.26
CLIP2-202ENST00000361545 CDC42SE2Q9NRR3 84 aa13.43□□□□□ -0.26
CLIP2-202ENST00000361545 CPAMD8Q8IZJ3 1885 aa13.43□□□□□ -0.26
CLIP2-202ENST00000361545 NUPR2A6NF83 97 aa13.42□□□□□ -0.26
CLIP2-202ENST00000361545 MRPS36P82909 103 aaKnown RBP13.42□□□□□ -0.26
CLIP2-202ENST00000361545 LOC107984640A0A0U1RRK4 108 aa13.42□□□□□ -0.26
CLIP2-202ENST00000361545 TRIAP1O43715 76 aa13.41□□□□□ -0.26
CLIP2-202ENST00000361545 LINC00643Q86TS7 51 aa13.4□□□□□ -0.26
CLIP2-202ENST00000361545 EPG5Q9HCE0 2579 aa13.4□□□□□ -0.26
CLIP2-202ENST00000361545 CNFNQ9BYD5 112 aa13.4□□□□□ -0.26
CLIP2-202ENST00000361545 CYSRT1A8MQ03 144 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 IGKV4-1P06312 121 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 SCXQ7RTU7 201 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 ADAMTS20P59510 1910 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 TEX49A0A1B0GTD5 131 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 M0R378 163 aa13.39□□□□□ -0.27
CLIP2-202ENST00000361545 ZNF580Q9UK33 172 aa13.38□□□□□ -0.27
CLIP2-202ENST00000361545 BRK1Q8WUW1 75 aa13.37□□□□□ -0.27
CLIP2-202ENST00000361545 FHL2Q14192 279 aa13.36□□□□□ -0.27
CLIP2-202ENST00000361545 HRCT1Q6UXD1 115 aa13.36□□□□□ -0.27
CLIP2-202ENST00000361545 Q6ZQY7 126 aa13.36□□□□□ -0.27
CLIP2-202ENST00000361545 SPINK6Q6UWN8 80 aa13.36□□□□□ -0.27
CLIP2-202ENST00000361545 ACANP16112 2415 aa13.35□□□□□ -0.27
CLIP2-202ENST00000361545 UNQ6190/PRO20217Q6UXQ8 127 aa13.35□□□□□ -0.27
CLIP2-202ENST00000361545 CCKP06307 115 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 UPK3BQ9BT76 320 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 LINC00242Q5T6M2 205 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 Q8IZM0 81 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 POM121L12Q8N7R1 296 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 IGLV4-60A0A075B6I1 120 aa13.34□□□□□ -0.27
CLIP2-202ENST00000361545 C3orf84H3BNL1 204 aa13.33□□□□□ -0.28
CLIP2-202ENST00000361545 UQCRQO14949 82 aa13.33□□□□□ -0.28
CLIP2-202ENST00000361545 TIMM17BO60830 172 aa13.33□□□□□ -0.28
CLIP2-202ENST00000361545 IGIPA6NJ69 53 aa13.33□□□□□ -0.28
CLIP2-202ENST00000361545 PLAC8L1A1L4L8 177 aa13.32□□□□□ -0.28
CLIP2-202ENST00000361545 LINC00694P0DN24 101 aa13.32□□□□□ -0.28
CLIP2-202ENST00000361545 TRBV30A0A0K0K1B3 111 aa13.31□□□□□ -0.28
CLIP2-202ENST00000361545 C9orf116Q5BN46 136 aaPredicted RBP13.31□□□□□ -0.28
CLIP2-202ENST00000361545 EML5Q05BV3 1969 aa13.31□□□□□ -0.28
CLIP2-202ENST00000361545 IGLV9-49A0A0B4J1Y8 123 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 DHRS4-AS1Q9P1J3 65 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 LINC00474Q9P2X8 69 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 SDIM1Q6ZPB5 146 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 SMIM11BQ8TCY0 68 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 CHCHD7Q9BUK0 85 aa13.3□□□□□ -0.28
CLIP2-202ENST00000361545 ZNF73O43830 326 aaPredicted RBP13.29□□□□□ -0.28
CLIP2-202ENST00000361545 COX17Q14061 63 aa13.29□□□□□ -0.28
CLIP2-202ENST00000361545 ZNF706Q9Y5V0 76 aaPredicted RBP13.29□□□□□ -0.28
CLIP2-202ENST00000361545 C20orf197Q8N268 126 aa13.28□□□□□ -0.28
CLIP2-202ENST00000361545 Q6ZSN1 163 aa13.28□□□□□ -0.28
CLIP2-202ENST00000361545 WFDC10BQ8IUB3 73 aa13.28□□□□□ -0.28
CLIP2-202ENST00000361545 C6orf223Q8N319 242 aa13.28□□□□□ -0.28
CLIP2-202ENST00000361545 M0QXV9 152 aa13.26□□□□□ -0.29
CLIP2-202ENST00000361545 COX6A2Q02221 97 aa13.26□□□□□ -0.29
CLIP2-202ENST00000361545 USP17L23D6RBM5 183 aa13.26□□□□□ -0.29
CLIP2-202ENST00000361545 TET2Q6N021 2002 aaPredicted RBP13.25□□□□□ -0.29
CLIP2-202ENST00000361545 ENHOQ6UWT2 76 aa13.25□□□□□ -0.29
CLIP2-202ENST00000361545 C3orf22Q8N5N4 141 aa13.25□□□□□ -0.29
CLIP2-202ENST00000361545 IGLV5-52A0A0A0MRZ9 124 aa13.25□□□□□ -0.29
CLIP2-202ENST00000361545 SMIM1B2RUZ4 78 aa13.25□□□□□ -0.29
CLIP2-202ENST00000361545 C2orf91Q6ZV80 131 aa13.24□□□□□ -0.29
CLIP2-202ENST00000361545 UTRNP46939 3433 aa13.24□□□□□ -0.29
CLIP2-202ENST00000361545 ANKRD17O75179 2603 aaKnown RBP13.24□□□□□ -0.29
CLIP2-202ENST00000361545 EGFEM1PQ0D2K5 195 aa13.23□□□□□ -0.29
CLIP2-202ENST00000361545 BEAN1Q3B7T3 259 aa13.22□□□□□ -0.29
CLIP2-202ENST00000361545 LYPD5Q6UWN5 251 aa13.22□□□□□ -0.29
CLIP2-202ENST00000361545 Q8N2B8 174 aa13.22□□□□□ -0.29
CLIP2-202ENST00000361545 URB1-AS1Q96HZ7 61 aa13.22□□□□□ -0.29
CLIP2-202ENST00000361545 SVIPQ8NHG7 77 aa13.21□□□□□ -0.29
CLIP2-202ENST00000361545 CASC2Q6XLA1 102 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms