RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 PRORYQ9H606 182 aa11.74□□□□□ -0.53
COL18A1-203ENST00000359759 PCOTHQ58A44 107 aa11.74□□□□□ -0.53
COL18A1-203ENST00000359759 NBASA2RRP1 2371 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 PRR3P79522 188 aaKnown RBP11.73□□□□□ -0.53
COL18A1-203ENST00000359759 TRBV7-6A0A0J9YX20 115 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 BEAN1Q3B7T3 259 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 ZNF843Q8N446 348 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 A0A087WYN8 130 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 SPINK1P00995 79 aa11.73□□□□□ -0.53
COL18A1-203ENST00000359759 IGHV6-1A0A0B4J1U7 121 aa11.72□□□□□ -0.53
COL18A1-203ENST00000359759 LELP1Q5T871 98 aa11.72□□□□□ -0.53
COL18A1-203ENST00000359759 MED12LQ86YW9 2145 aa11.72□□□□□ -0.53
COL18A1-203ENST00000359759 FBXL19-AS1Q494R0 122 aa11.72□□□□□ -0.53
COL18A1-203ENST00000359759 CYSRT1A8MQ03 144 aa11.71□□□□□ -0.53
COL18A1-203ENST00000359759 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.71□□□□□ -0.53
COL18A1-203ENST00000359759 COX17Q14061 63 aa11.71□□□□□ -0.54
COL18A1-203ENST00000359759 TRAV7A0A075B6U4 112 aa11.71□□□□□ -0.54
COL18A1-203ENST00000359759 NTM-AS1Q6ZSK4 140 aa11.7□□□□□ -0.54
COL18A1-203ENST00000359759 PRYO14603 147 aa11.7□□□□□ -0.54
COL18A1-203ENST00000359759 ZNF702PQ9H963 129 aa11.7□□□□□ -0.54
COL18A1-203ENST00000359759 COX6A2Q02221 97 aa11.7□□□□□ -0.54
COL18A1-203ENST00000359759 DEFB116Q30KQ4 102 aa11.7□□□□□ -0.54
COL18A1-203ENST00000359759 EDN2P20800 178 aa11.69□□□□□ -0.54
COL18A1-203ENST00000359759 MRPS36P82909 103 aaKnown RBP11.69□□□□□ -0.54
COL18A1-203ENST00000359759 Q8N814 137 aa11.68□□□□□ -0.54
COL18A1-203ENST00000359759 LINC01547P58512 204 aaPredicted RBP11.68□□□□□ -0.54
COL18A1-203ENST00000359759 UNQ6190/PRO20217Q6UXQ8 127 aa11.68□□□□□ -0.54
COL18A1-203ENST00000359759 CDC42SE2Q9NRR3 84 aa11.68□□□□□ -0.54
COL18A1-203ENST00000359759 PCDH15Q96QU1 1955 aa11.67□□□□□ -0.54
COL18A1-203ENST00000359759 C1orf137Q5JT78 98 aa11.66□□□□□ -0.54
COL18A1-203ENST00000359759 Q8IZM0 81 aa11.66□□□□□ -0.54
COL18A1-203ENST00000359759 ALPK3Q96L96 1907 aa11.66□□□□□ -0.54
COL18A1-203ENST00000359759 POLR2KP53803 58 aaKnown RBP11.66□□□□□ -0.54
COL18A1-203ENST00000359759 LY6G6DO95868 133 aa11.66□□□□□ -0.54
COL18A1-203ENST00000359759 TRBV10-3A0A0K0K1G6 114 aa11.65□□□□□ -0.54
COL18A1-203ENST00000359759 REG3GQ6UW15 175 aa11.64□□□□□ -0.55
COL18A1-203ENST00000359759 CRYGAP11844 174 aa11.64□□□□□ -0.55
COL18A1-203ENST00000359759 MED13LQ71F56 2210 aa11.64□□□□□ -0.55
COL18A1-203ENST00000359759 KLLNB2CW77 178 aa11.64□□□□□ -0.55
COL18A1-203ENST00000359759 CREBBPQ92793 2442 aa11.63□□□□□ -0.55
COL18A1-203ENST00000359759 TRBV7-7A0A0K0K1E9 115 aa11.63□□□□□ -0.55
COL18A1-203ENST00000359759 C6orf223Q8N319 242 aa11.63□□□□□ -0.55
COL18A1-203ENST00000359759 SHISA2Q6UWI4 295 aa11.62□□□□□ -0.55
COL18A1-203ENST00000359759 TSPEAR-AS2P59090 65 aa11.62□□□□□ -0.55
COL18A1-203ENST00000359759 PSMG3-AS1Q96PY0 264 aa11.62□□□□□ -0.55
COL18A1-203ENST00000359759 IGIPA6NJ69 53 aa11.62□□□□□ -0.55
COL18A1-203ENST00000359759 FREM1Q5H8C1 2179 aa11.62□□□□□ -0.55
COL18A1-203ENST00000359759 LINC00242Q5T6M2 205 aa11.61□□□□□ -0.55
COL18A1-203ENST00000359759 H0Y9P7 68 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 LINC00575Q6W349 94 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 ZNF580Q9UK33 172 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 C11orf71Q6IPW1 123 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 Q8N3U1 123 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 LINC01006Q8NI28 216 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 PTPRQQ9UMZ3 2332 aa11.6□□□□□ -0.55
COL18A1-203ENST00000359759 MRGPRG-AS1Q2M3A8 158 aa11.59□□□□□ -0.55
COL18A1-203ENST00000359759 LINC00474Q9P2X8 69 aa11.59□□□□□ -0.55
COL18A1-203ENST00000359759 SBSPONQ8IVN8 264 aa11.59□□□□□ -0.55
COL18A1-203ENST00000359759 Q9UF83 564 aa11.59□□□□□ -0.55
COL18A1-203ENST00000359759 ADAMTSL4-AS1Q5T5F5 129 aa11.59□□□□□ -0.55
COL18A1-203ENST00000359759 IGLV4-60A0A075B6I1 120 aa11.58□□□□□ -0.56
COL18A1-203ENST00000359759 SMIM1B2RUZ4 78 aa11.58□□□□□ -0.56
COL18A1-203ENST00000359759 OXLD1Q5BKU9 147 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 HCFC1P51610 2035 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 TECTAO75443 2155 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 URB1-AS1Q96HZ7 61 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 Q9BRP9 147 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 CACNA1HO95180 2353 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 PLA2G2AP14555 144 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 ARHGAP32A7KAX9 2087 aa11.57□□□□□ -0.56
COL18A1-203ENST00000359759 RPL28P46779 137 aaKnown RBP11.56□□□□□ -0.56
COL18A1-203ENST00000359759 CHCHD7Q9BUK0 85 aa11.56□□□□□ -0.56
COL18A1-203ENST00000359759 PCNX3Q9H6A9 2034 aa11.56□□□□□ -0.56
COL18A1-203ENST00000359759 Q8N6K4 173 aa11.55□□□□□ -0.56
COL18A1-203ENST00000359759 A8MTW9 85 aa11.55□□□□□ -0.56
COL18A1-203ENST00000359759 LINC00310P59036 64 aa11.55□□□□□ -0.56
COL18A1-203ENST00000359759 LINC01556Q5JQF7 62 aa11.55□□□□□ -0.56
COL18A1-203ENST00000359759 BRI3O95415 125 aa11.53□□□□□ -0.56
COL18A1-203ENST00000359759 IGLV1-40P01703 118 aa11.53□□□□□ -0.56
COL18A1-203ENST00000359759 ATRXP46100 2492 aa11.53□□□□□ -0.56
COL18A1-203ENST00000359759 A0A087WSZ3 146 aa11.52□□□□□ -0.56
COL18A1-203ENST00000359759 EML5Q05BV3 1969 aa11.52□□□□□ -0.56
COL18A1-203ENST00000359759 FAM208BQ5VWN6 2430 aa11.52□□□□□ -0.56
COL18A1-203ENST00000359759 IGLV5-52A0A0A0MRZ9 124 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 HCG22E2RYF7 251 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 PLXNB1O43157 2135 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 NUPR2A6NF83 97 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 EGFEM1PQ0D2K5 195 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 PRO3102Q9H379 93 aa11.51□□□□□ -0.57
COL18A1-203ENST00000359759 CSDC2Q9Y534 153 aaKnown RBP11.51□□□□□ -0.57
COL18A1-203ENST00000359759 OTOGLQ3ZCN5 2332 aa11.5□□□□□ -0.57
COL18A1-203ENST00000359759 FSTL3O95633 263 aa11.49□□□□□ -0.57
COL18A1-203ENST00000359759 SMR3AQ99954 134 aa11.49□□□□□ -0.57
COL18A1-203ENST00000359759 DSCAMO60469 2012 aa11.49□□□□□ -0.57
COL18A1-203ENST00000359759 ATG2AQ2TAZ0 1938 aa11.48□□□□□ -0.57
COL18A1-203ENST00000359759 BDP1A6H8Y1 2624 aa11.48□□□□□ -0.57
COL18A1-203ENST00000359759 PRR14LQ5THK1 2151 aa11.47□□□□□ -0.57
COL18A1-203ENST00000359759 CNFNQ9BYD5 112 aa11.47□□□□□ -0.57
COL18A1-203ENST00000359759 Q6ZSN1 163 aa11.47□□□□□ -0.57
COL18A1-203ENST00000359759 TMEM254Q8TBM7 123 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms