RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 DCHS2Q6V1P9 2916 aa5.95□□□□□ -1.46
ATG4A-201ENST00000343524 FAM27E3Q08E93 113 aa5.94□□□□□ -1.46
ATG4A-201ENST00000343524 TMEM86BQ8N661 226 aa5.94□□□□□ -1.46
ATG4A-201ENST00000343524 FAM215AQ9Y5M1 114 aa5.94□□□□□ -1.46
ATG4A-201ENST00000343524 IGHV3-49A0A0A0MS15 119 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 NDUFA4O00483 81 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 NDUFC1O43677 76 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 LINC00336Q6ZUF6 198 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 LINC00846Q9NV44 126 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 IGHV3-16A0A0C4DH30 117 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 SEC61GP60059 68 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 PRB3Q04118 309 aaPredicted RBP5.93□□□□□ -1.46
ATG4A-201ENST00000343524 Q8N2B8 174 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 Q8N9W7 124 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 FDCSPQ8NFU4 85 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 Q9H8V8 135 aa5.93□□□□□ -1.46
ATG4A-201ENST00000343524 A0A087WVE0 104 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 IGLV5-39A0A0G2JS06 123 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 JMJD7-PLA2G4BH0Y9G9 81 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 RPL35AP18077 110 aaKnown RBP5.92□□□□□ -1.46
ATG4A-201ENST00000343524 XCL1P47992 114 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 C14orf132Q9NPU4 83 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 XCL2Q9UBD3 114 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 ACANP16112 2415 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 JMJD1CQ15652 2540 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 PKDREJQ9NTG1 2253 aa5.92□□□□□ -1.46
ATG4A-201ENST00000343524 TRAV7A0A075B6U4 112 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 ATP6V0E1O15342 81 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 KLKP1Q107X0 134 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 C1orf195Q5TG92 126 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 C20orf197Q8N268 126 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 DEFB104AQ8WTQ1 72 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 POLEQ07864 2286 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 PRRC2CQ9Y520 2896 aaKnown RBP5.91□□□□□ -1.46
ATG4A-201ENST00000343524 TRBV12-3P01733 135 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 CCKP06307 115 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 FAM218AQ96MZ4 157 aa5.91□□□□□ -1.46
ATG4A-201ENST00000343524 NSD1Q96L73 2696 aaPredicted RBP5.91□□□□□ -1.46
ATG4A-201ENST00000343524 FAM19A3Q7Z5A8 133 aa5.9□□□□□ -1.46
ATG4A-201ENST00000343524 PRRC2AP48634 2157 aaKnown RBP5.9□□□□□ -1.47
ATG4A-201ENST00000343524 IGHV1OR15-1A0A075B7D0 117 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 PIK3CD-AS1Q5SR53 167 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 UBL5Q9BZL1 73 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 Q9HAA7 133 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 CDKN2A-AS1Q9UH64 79 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 PKIGQ9Y2B9 76 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 ZNF469Q96JG9 3925 aaPredicted RBP5.89□□□□□ -1.47
ATG4A-201ENST00000343524 H7BZZ5 65 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 LCE1DQ5T752 114 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 LYPD5Q6UWN5 251 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 C22orf34Q6ZV56 151 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 FAM104AQ969W3 186 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 ORMDL1Q9P0S3 153 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 ZGRF1Q86YA3 2104 aa5.89□□□□□ -1.47
ATG4A-201ENST00000343524 A8MZ25 164 aa5.88□□□□□ -1.47
ATG4A-201ENST00000343524 SOSTDC1Q6X4U4 206 aa5.88□□□□□ -1.47
ATG4A-201ENST00000343524 MUC4Q99102 2169 aa5.88□□□□□ -1.47
ATG4A-201ENST00000343524 ABCA1O95477 2261 aa5.88□□□□□ -1.47
ATG4A-201ENST00000343524 E7EQL1 145 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 F6UB75 175 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 H3BUA1 57 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 C19orf54Q5BKX5 351 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 DGAT2L7PQ6IED9 249 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 ZNF625Q96I27 306 aaPredicted RBP5.87□□□□□ -1.47
ATG4A-201ENST00000343524 CHCHD7Q9BUK0 85 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 LAMTOR3Q9UHA4 124 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 TRAV23DV6A0A075B6W5 121 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 USMG5Q96IX5 58 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 KRTAP4-7Q9BYR0 210 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 C16orf95Q9H693 158 aa5.87□□□□□ -1.47
ATG4A-201ENST00000343524 BLCAPP62952 87 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 ARHGAP32A7KAX9 2087 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 A0A087WYN8 130 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 SMIM1B2RUZ4 78 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 CFHR3Q02985 330 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 RNASE13Q5GAN3 156 aaKnown RBP5.86□□□□□ -1.47
ATG4A-201ENST00000343524 IGFL3Q6UXB1 125 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 SMR3AQ99954 134 aa5.86□□□□□ -1.47
ATG4A-201ENST00000343524 CADP27708 2225 aa5.85□□□□□ -1.47
ATG4A-201ENST00000343524 HOXD3P31249 432 aaPredicted RBP5.85□□□□□ -1.47
ATG4A-201ENST00000343524 BRK1Q8WUW1 75 aa5.85□□□□□ -1.47
ATG4A-201ENST00000343524 RHPN1-AS1Q9BWJ2 59 aa5.85□□□□□ -1.47
ATG4A-201ENST00000343524 SND1-IT1Q9HBX3 110 aa5.85□□□□□ -1.47
ATG4A-201ENST00000343524 PLCE1Q9P212 2302 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 G3V318 75 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 K7EMT4 169 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 LECT2O14960 151 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 SNRPD3P62318 126 aaKnown RBP5.84□□□□□ -1.47
ATG4A-201ENST00000343524 FP248Q71RG6 208 aaPredicted RBP5.84□□□□□ -1.47
ATG4A-201ENST00000343524 WFDC11Q8NEX6 87 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 SMIM11BQ8TCY0 68 aa5.84□□□□□ -1.47
ATG4A-201ENST00000343524 FLNAP21333 2647 aaKnown RBP5.84□□□□□ -1.47
ATG4A-201ENST00000343524 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.84□□□□□ -1.48
ATG4A-201ENST00000343524 IGKV2-29A2NJV5 120 aaPredicted RBP5.84□□□□□ -1.48
ATG4A-201ENST00000343524 C19orf84I3L1E1 186 aa5.84□□□□□ -1.48
ATG4A-201ENST00000343524 TMEM256-PLSCR3K7ERE1 68 aa5.84□□□□□ -1.48
ATG4A-201ENST00000343524 NCR3O14931 201 aa5.84□□□□□ -1.48
ATG4A-201ENST00000343524 DEFB1P60022 68 aa5.84□□□□□ -1.48
ATG4A-201ENST00000343524 RBM3P98179 157 aaKnown RBP5.84□□□□□ -1.48
ATG4A-201ENST00000343524 ENHOQ6UWT2 76 aa5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 90.2 ms