RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 COL7A1Q02388 2944 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 TRAV8-3A0A0A6YYJ7 113 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 TINCRA0A1B0GVN0 87 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 E9PLD3 99 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 H3BNG1 76 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 ZNF25P17030 456 aaPredicted RBP2.84□□□□□ -1.95
MCF2-201ENST00000338585 BOD1L2Q8IYS8 172 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 LINC00469Q8N7U9 141 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 CDKN2A-AS1Q9UH64 79 aa2.84□□□□□ -1.95
MCF2-201ENST00000338585 TRAV10A0A0B4J240 114 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 TMEM223A0PJW6 202 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 TNP2Q05952 138 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 ESRGQ1W209 222 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 LELP1Q5T871 98 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 WFDC10BQ8IUB3 73 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 LINC00528Q8N1L1 170 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 GEMIN7Q9H840 131 aaKnown RBP2.83□□□□□ -1.96
MCF2-201ENST00000338585 SPINK8P0C7L1 97 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 SMAGPQ0VAQ4 97 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 SH2D6Q7Z4S9 175 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 SNHG12Q9BXW3 62 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 PRKDCP78527 4128 aaKnown RBP2.83□□□□□ -1.96
MCF2-201ENST00000338585 IGLV5-45A0A087WSX0 123 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 A0A1B0GUV1 79 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 ZNF561-AS1K7EIQ3 104 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 IGHV3-30P01768 117 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 IGHV3-33P01772 117 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 ANGP03950 147 aaKnown RBP2.83□□□□□ -1.96
MCF2-201ENST00000338585 IGHV3-30-3P0DP02 117 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 IGHV3-30-5P0DP03 117 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 TIRAPP58753 221 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 HERVK_113P61574 105 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 LINC00269Q8N2A0 174 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 MEGF8Q7Z7M0 2845 aa2.83□□□□□ -1.96
MCF2-201ENST00000338585 MYMXA0A1B0GTQ4 84 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 LINC00959A0A1B0GUT2 108 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 IGLL5B9A064 214 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 J3QQQ9 107 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 DLEU1O43261 78 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 HINT1P49773 126 aaPredicted RBP2.82□□□□□ -1.96
MCF2-201ENST00000338585 HERVK_113P63121 156 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 BATFQ16520 125 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 FAM19A3Q7Z5A8 133 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 PLEKHB2Q96CS7 222 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 MRPS16Q9Y3D3 137 aaKnown RBP2.82□□□□□ -1.96
MCF2-201ENST00000338585 IGLV10-54A0A075B6I4 117 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 ZNF815PA8K554 130 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 SMIM1B2RUZ4 78 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 LEPROTO15243 131 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 XCL1P47992 114 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 KLK12Q9UKR0 248 aa2.82□□□□□ -1.96
MCF2-201ENST00000338585 IGHV1-58A0A0C4DH39 117 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 CCL25O15444 150 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 LGALS3P17931 250 aaKnown RBP2.81□□□□□ -1.96
MCF2-201ENST00000338585 REG3AQ06141 175 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 C5orf38Q86SI9 138 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 IGHV3OR16-9A0A0B4J2B5 98 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 H3BRM9 83 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 M0R143 59 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 SEC11AP67812 179 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 ENHOQ6UWT2 76 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 LINC00588Q9Y4M8 146 aa2.81□□□□□ -1.96
MCF2-201ENST00000338585 IGLV5-39A0A0G2JS06 123 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 K7EP13 123 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 SIVA1O15304 175 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 NHLRC4P0CG21 123 aaPredicted RBP2.8□□□□□ -1.96
MCF2-201ENST00000338585 SS18Q15532 418 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 BVES-AS1Q5T3Y7 98 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 SCGB1D4Q6XE38 83 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 C10orf126Q8N4M7 172 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 C15orf53Q8NAA6 179 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 CHCHD10Q8WYQ3 142 aaPredicted RBP2.8□□□□□ -1.96
MCF2-201ENST00000338585 UBE2WQ96B02 151 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 PRR34Q9NV39 138 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 HIGD1BQ9P298 99 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 NDUFA12Q9UI09 145 aa2.8□□□□□ -1.96
MCF2-201ENST00000338585 A0A087WZ39 114 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 HSD52Q0P140 79 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 ZFAND6Q6FIF0 208 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 CDIP1Q9H305 208 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 TOMM7Q9P0U1 55 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 FBN3Q75N90 2809 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 A0A0J9YXY3 114 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 GAGE12HA6NDE8 117 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 GCSHP23434 173 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 FXYD2P54710 66 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 FOXI1Q12951 378 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 ZNF625Q96I27 306 aaPredicted RBP2.79□□□□□ -1.96
MCF2-201ENST00000338585 Q9H8V8 135 aa2.79□□□□□ -1.96
MCF2-201ENST00000338585 CRPP02741 224 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 CCL18P55774 89 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 LINC01556Q5JQF7 62 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 CD164L2Q6UWJ8 174 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 Q6ZVH6 145 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 HIST1H4GQ99525 98 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 APLNQ9ULZ1 77 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 A0A0U1RRA0 63 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 COX7A2LO14548 114 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 NDUFA1O15239 70 aa2.78□□□□□ -1.96
MCF2-201ENST00000338585 DNAH10OSP0CZ25 163 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms