RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CDKN2A-AS1Q9UH64 79 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 TINCRA0A1B0GVN0 87 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 CFC1BP0CG36 223 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 CFC1P0CG37 223 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 KPRPQ5T749 579 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-201ENST00000335508 IGLL5B9A064 214 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 PCP2Q8IVA1 136 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 COX7B2Q8TF08 81 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 F8WEM9 126 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 BVES-AS1Q5T3Y7 98 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 NFE4Q86UQ8 179 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 REG3AQ06141 175 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 KRTAP24-1Q3LI83 254 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 MPLKIPQ8TAP9 179 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 IBA57-AS1B1ANH7 110 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 ZNF22P17026 224 aaPredicted RBP4.97□□□□□ -1.61
SF3B1-201ENST00000335508 Q6ZUT4 128 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 SND1-IT1Q9HBX3 110 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 CD164L2Q6UWJ8 174 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 SPANXCQ9NY87 97 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 LOC107984640A0A0U1RRK4 108 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 Q8N976 141 aa4.97□□□□□ -1.61
SF3B1-201ENST00000335508 RAI1Q7Z5J4 1906 aaPredicted RBP4.96□□□□□ -1.61
SF3B1-201ENST00000335508 IGLV10-54A0A075B6I4 117 aa4.96□□□□□ -1.61
SF3B1-201ENST00000335508 RBM3P98179 157 aaKnown RBP4.96□□□□□ -1.61
SF3B1-201ENST00000335508 UNC80Q8N2C7 3258 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 KIF25-AS1Q9Y6Z4 181 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00694P0DN24 101 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 RBMY1FQ15415 496 aaKnown RBP4.96□□□□□ -1.62
SF3B1-201ENST00000335508 RNASE13Q5GAN3 156 aaKnown RBP4.96□□□□□ -1.62
SF3B1-201ENST00000335508 DMXL2Q8TDJ6 3036 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 NF1P21359 2839 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 FRYQ5TBA9 3013 aa4.96□□□□□ -1.62
SF3B1-201ENST00000335508 F8WDY8 70 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 GAGE2AQ6NT46 116 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 FAM240AA0A1B0GVK7 77 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 A0A1B0GUV1 79 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 TSHBP01222 138 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 IGHV3-30P01768 117 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 IGHV3-33P01772 117 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 IGHV3-30-5P0DP03 117 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 TP73-AS1Q9UF72 201 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 KRTAP1-3Q8IUG1 177 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 C2orf82Q6UX34 121 aa4.95□□□□□ -1.62
SF3B1-201ENST00000335508 C9orf118A6NHY6 69 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 CHCHD10Q8WYQ3 142 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-201ENST00000335508 TIMM17BO60830 172 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 IGIPA6NJ69 53 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 H3BQ85 93 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 C12orf74Q32Q52 190 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 CLPSL2Q6UWE3 100 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00269Q8N2A0 174 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 FAM19A4Q96LR4 140 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 OPRPNQ99935 248 aaPredicted RBP4.94□□□□□ -1.62
SF3B1-201ENST00000335508 KRTAP1-1Q07627 177 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 C11orf72Q8NBR9 251 aa4.94□□□□□ -1.62
SF3B1-201ENST00000335508 H3BNG1 76 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 LAMA1P25391 3075 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 P0DMU3 169 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 FAM231AP0DMU4 169 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 FAM231CP0DMU5 169 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 SYCNQ0VAF6 134 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 MDFIQ99750 246 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 LAMTOR3Q9UHA4 124 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 NUPR2A6NF83 97 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 NPC2P61916 151 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 UBE2BP63146 152 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 CEND1Q8N111 149 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 CDC42SE2Q9NRR3 84 aa4.93□□□□□ -1.62
SF3B1-201ENST00000335508 HIST1H4AP62805 103 aaKnown RBP4.93□□□□□ -1.62
SF3B1-201ENST00000335508 CCDC179H3BU77 68 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 TNRC18O15417 2968 aaPredicted RBP4.92□□□□□ -1.62
SF3B1-201ENST00000335508 TTTY13Q9BZ97 58 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 TET2Q6N021 2002 aaPredicted RBP4.92□□□□□ -1.62
SF3B1-201ENST00000335508 NBEAQ8NFP9 2946 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 NDUFC2-KCTD14E9PQ53 114 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 ETDBQ3ZM63 59 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 MIR7-3HGQ8N6C7 128 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 BOD1L1Q8NFC6 3051 aa4.92□□□□□ -1.62
SF3B1-201ENST00000335508 CEMP1Q6PRD7 247 aaPredicted RBP4.92□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00315P59091 139 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 SPANXB1Q9NS25 103 aaPredicted RBP4.91□□□□□ -1.62
SF3B1-201ENST00000335508 ETDCA0A1B0GVM5 59 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00310P59036 64 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 FHL2Q14192 279 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00242Q5T6M2 205 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 UBE2D4Q9Y2X8 147 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 FAM236AA0A1B0GUQ0 79 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 FAM236BA0A1B0GV22 79 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 F8W1H4 67 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 H3BT86 120 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 PPDPFLQ8WWR9 84 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 SPANXDQ9BXN6 97 aa4.91□□□□□ -1.62
SF3B1-201ENST00000335508 CELSR2Q9HCU4 2923 aa4.9□□□□□ -1.62
SF3B1-201ENST00000335508 LINC00959A0A1B0GUT2 108 aa4.9□□□□□ -1.62
SF3B1-201ENST00000335508 PDE6GP18545 87 aa4.9□□□□□ -1.62
SF3B1-201ENST00000335508 Q8IZM0 81 aa4.9□□□□□ -1.62
SF3B1-201ENST00000335508 A0A1W2PPM0 123 aa4.9□□□□□ -1.63
SF3B1-201ENST00000335508 Q6ZTC4 211 aa4.9□□□□□ -1.63
SF3B1-201ENST00000335508 K7ERJ3 54 aa4.9□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms