RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 IGLV4-60A0A075B6I1 120 aa12.31□□□□□ -0.44
HMGA1-201ENST00000311487 K7ERU9 68 aa12.31□□□□□ -0.44
HMGA1-201ENST00000311487 RNASE13Q5GAN3 156 aaKnown RBP12.31□□□□□ -0.44
HMGA1-201ENST00000311487 C20orf203Q8NBC4 194 aa12.31□□□□□ -0.44
HMGA1-201ENST00000311487 KLK12Q9UKR0 248 aa12.31□□□□□ -0.44
HMGA1-201ENST00000311487 OPRPNQ99935 248 aaPredicted RBP12.3□□□□□ -0.44
HMGA1-201ENST00000311487 DNAH10OSP0CZ25 163 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 AMMECR1LQ6DCA0 310 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 CST9LQ9H4G1 147 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 IGKV3OR2-268A0A0C4DH90 116 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 A6NJY4 79 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 ANGP03950 147 aaKnown RBP12.29□□□□□ -0.44
HMGA1-201ENST00000311487 PMVKQ15126 192 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 BVES-AS1Q5T3Y7 98 aa12.29□□□□□ -0.44
HMGA1-201ENST00000311487 NBDYA0A0U1RRE5 68 aa12.28□□□□□ -0.44
HMGA1-201ENST00000311487 LINC01556Q5JQF7 62 aa12.28□□□□□ -0.44
HMGA1-201ENST00000311487 TTTY13Q9BZ97 58 aa12.28□□□□□ -0.44
HMGA1-201ENST00000311487 Q9HAA7 133 aa12.27□□□□□ -0.44
HMGA1-201ENST00000311487 IGLV4-69A0A075B6H9 119 aa12.27□□□□□ -0.45
HMGA1-201ENST00000311487 LINC00269Q8N2A0 174 aa12.27□□□□□ -0.45
HMGA1-201ENST00000311487 UBE2D4Q9Y2X8 147 aa12.26□□□□□ -0.45
HMGA1-201ENST00000311487 UBE2WQ96B02 151 aa12.25□□□□□ -0.45
HMGA1-201ENST00000311487 C11orf86A6NJI1 115 aa12.24□□□□□ -0.45
HMGA1-201ENST00000311487 DGAT2L7PQ6IED9 249 aa12.24□□□□□ -0.45
HMGA1-201ENST00000311487 IGLV4-3A0A075B6K6 122 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 VAMP3Q15836 100 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 CFAP161Q6P656 301 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 Q6ZUT4 128 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 MAPKAPK5-AS1Q8N8E1 139 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 OR5A1Q8NGJ0 315 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 FAM104AQ969W3 186 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 DNAH10Q8IVF4 4471 aa12.23□□□□□ -0.45
HMGA1-201ENST00000311487 RYR2Q92736 4967 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 IGLV10-54A0A075B6I4 117 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 PAPPA-AS1Q5QFB9 102 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 ENHOQ6UWT2 76 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 TMEM101Q96IK0 257 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 PYGO1Q9Y3Y4 419 aa12.22□□□□□ -0.45
HMGA1-201ENST00000311487 A0A1B0GUV1 79 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 E9PLD3 99 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 HSD52Q0P140 79 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 Q6ZR54 194 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 HIGD1BQ9P298 99 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 RYR3Q15413 4870 aa12.21□□□□□ -0.45
HMGA1-201ENST00000311487 H7C423 109 aa12.21□□□□□ -0.46
HMGA1-201ENST00000311487 REG3AQ06141 175 aa12.2□□□□□ -0.46
HMGA1-201ENST00000311487 CDC42SE2Q9NRR3 84 aa12.2□□□□□ -0.46
HMGA1-201ENST00000311487 DNAH2Q9P225 4427 aa12.19□□□□□ -0.46
HMGA1-201ENST00000311487 SCGB1A1P11684 91 aa12.19□□□□□ -0.46
HMGA1-201ENST00000311487 IBA57-AS1B1ANH7 110 aa12.19□□□□□ -0.46
HMGA1-201ENST00000311487 Q6ZVH6 145 aa12.19□□□□□ -0.46
HMGA1-201ENST00000311487 NFE4Q86UQ8 179 aa12.19□□□□□ -0.46
HMGA1-201ENST00000311487 CRPP02741 224 aa12.18□□□□□ -0.46
HMGA1-201ENST00000311487 TTC32Q5I0X7 151 aa12.18□□□□□ -0.46
HMGA1-201ENST00000311487 CHAC1Q9BUX1 264 aa12.18□□□□□ -0.46
HMGA1-201ENST00000311487 VCX2Q9H322 139 aa12.18□□□□□ -0.46
HMGA1-201ENST00000311487 C10orf126Q8N4M7 172 aa12.17□□□□□ -0.46
HMGA1-201ENST00000311487 AMELXQ99217 191 aa12.17□□□□□ -0.46
HMGA1-201ENST00000311487 SPANXA1Q9NS26 97 aa12.17□□□□□ -0.46
HMGA1-201ENST00000311487 TRAV13-1A0A0B4J241 112 aa12.17□□□□□ -0.46
HMGA1-201ENST00000311487 SEC11AP67812 179 aa12.17□□□□□ -0.46
HMGA1-201ENST00000311487 IGKV2D-24A0A075B6R9 120 aa12.16□□□□□ -0.46
HMGA1-201ENST00000311487 TAX1BP3O14907 124 aa12.16□□□□□ -0.46
HMGA1-201ENST00000311487 TMEM170BQ5T4T1 132 aa12.16□□□□□ -0.46
HMGA1-201ENST00000311487 DNAH6Q9C0G6 4158 aa12.16□□□□□ -0.46
HMGA1-201ENST00000311487 MYMXA0A1B0GTQ4 84 aa12.15□□□□□ -0.46
HMGA1-201ENST00000311487 HERVK_113P61574 105 aa12.15□□□□□ -0.46
HMGA1-201ENST00000311487 FRAS1Q86XX4 4008 aa12.15□□□□□ -0.46
HMGA1-201ENST00000311487 C1orf134Q5TEV5 83 aa12.15□□□□□ -0.46
HMGA1-201ENST00000311487 PRR34Q9NV39 138 aa12.15□□□□□ -0.46
HMGA1-201ENST00000311487 A0A0J9YXV3 536 aa12.14□□□□□ -0.47
HMGA1-201ENST00000311487 C6orf223Q8N319 242 aa12.14□□□□□ -0.47
HMGA1-201ENST00000311487 TIMM21Q9BVV7 248 aa12.14□□□□□ -0.47
HMGA1-201ENST00000311487 CSDC2Q9Y534 153 aaKnown RBP12.14□□□□□ -0.47
HMGA1-201ENST00000311487 ZNF22P17026 224 aaPredicted RBP12.13□□□□□ -0.47
HMGA1-201ENST00000311487 TRAV8-3A0A0A6YYJ7 113 aa12.12□□□□□ -0.47
HMGA1-201ENST00000311487 A0A1B0GV72 72 aa12.12□□□□□ -0.47
HMGA1-201ENST00000311487 XCL1P47992 114 aa12.12□□□□□ -0.47
HMGA1-201ENST00000311487 LINC00959A0A1B0GUT2 108 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 TMEM223A0PJW6 202 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 ZNF815PA8K554 130 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 LECT2O14960 151 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 A6NDN8 102 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 GCSHP23434 173 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 TSPEAR-AS2P59090 65 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 MRPS36P82909 103 aaKnown RBP12.11□□□□□ -0.47
HMGA1-201ENST00000311487 SMAGPQ0VAQ4 97 aa12.11□□□□□ -0.47
HMGA1-201ENST00000311487 RTL8CO15255 209 aa12.1□□□□□ -0.47
HMGA1-201ENST00000311487 PSCAO43653 123 aa12.1□□□□□ -0.47
HMGA1-201ENST00000311487 FXYD2P54710 66 aa12.1□□□□□ -0.47
HMGA1-201ENST00000311487 C1orf43Q9BWL3 253 aa12.1□□□□□ -0.47
HMGA1-201ENST00000311487 TAL2Q16559 108 aa12.09□□□□□ -0.47
HMGA1-201ENST00000311487 MIAQ16674 131 aa12.09□□□□□ -0.47
HMGA1-201ENST00000311487 Q6ZRN7 208 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-201ENST00000311487 CEND1Q8N111 149 aa12.09□□□□□ -0.47
HMGA1-201ENST00000311487 CHCHD10Q8WYQ3 142 aaPredicted RBP12.09□□□□□ -0.47
HMGA1-201ENST00000311487 PLEKHB2Q96CS7 222 aa12.09□□□□□ -0.47
HMGA1-201ENST00000311487 TM2D2Q9BX73 214 aa12.09□□□□□ -0.47
HMGA1-201ENST00000311487 GAGE12HA6NDE8 117 aa12.08□□□□□ -0.48
HMGA1-201ENST00000311487 TINCRA0A1B0GVN0 87 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms