RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PRADC1Q9BSG0 188 aa10.96□□□□□ -0.66
LSM6-201ENST00000296581 LINC00694P0DN24 101 aa10.95□□□□□ -0.66
LSM6-201ENST00000296581 LOC100131303A0A0U1RQF7 123 aa10.95□□□□□ -0.66
LSM6-201ENST00000296581 PMVKQ15126 192 aa10.95□□□□□ -0.66
LSM6-201ENST00000296581 PLNP26678 52 aa10.94□□□□□ -0.66
LSM6-201ENST00000296581 SFTA2Q6UW10 78 aa10.94□□□□□ -0.66
LSM6-201ENST00000296581 MYMXA0A1B0GTQ4 84 aa10.93□□□□□ -0.66
LSM6-201ENST00000296581 CELA1Q9UNI1 258 aa10.93□□□□□ -0.66
LSM6-201ENST00000296581 SPART-AS1P0CW21 52 aa10.93□□□□□ -0.66
LSM6-201ENST00000296581 LYRM7Q5U5X0 104 aa10.93□□□□□ -0.66
LSM6-201ENST00000296581 NTM-AS1Q6ZSK4 140 aa10.93□□□□□ -0.66
LSM6-201ENST00000296581 IGLV4-3A0A075B6K6 122 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 DAD1P61803 113 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 FAM104AQ969W3 186 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 OPRPNQ99935 248 aaPredicted RBP10.92□□□□□ -0.66
LSM6-201ENST00000296581 UBE2D4Q9Y2X8 147 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.92□□□□□ -0.66
LSM6-201ENST00000296581 IGKV2-29A2NJV5 120 aaPredicted RBP10.92□□□□□ -0.66
LSM6-201ENST00000296581 TCL1BO95988 128 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 KPRPQ5T749 579 aaPredicted RBP10.92□□□□□ -0.66
LSM6-201ENST00000296581 RETNQ9HD89 108 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 PRO0255Q9UI72 69 aa10.92□□□□□ -0.66
LSM6-201ENST00000296581 PAPPA-AS1Q5QFB9 102 aa10.91□□□□□ -0.66
LSM6-201ENST00000296581 TIMM21Q9BVV7 248 aa10.91□□□□□ -0.66
LSM6-201ENST00000296581 IGLV4-69A0A075B6H9 119 aa10.9□□□□□ -0.66
LSM6-201ENST00000296581 UBE2D1P51668 147 aa10.89□□□□□ -0.67
LSM6-201ENST00000296581 AMELXQ99217 191 aa10.89□□□□□ -0.67
LSM6-201ENST00000296581 ATP5G1P05496 136 aa10.89□□□□□ -0.67
LSM6-201ENST00000296581 CEMP1Q6PRD7 247 aaPredicted RBP10.89□□□□□ -0.67
LSM6-201ENST00000296581 GYPEP15421 78 aa10.88□□□□□ -0.67
LSM6-201ENST00000296581 C11orf68Q9H3H3 251 aaKnown RBP10.88□□□□□ -0.67
LSM6-201ENST00000296581 K7EIL1 84 aa10.87□□□□□ -0.67
LSM6-201ENST00000296581 SCGB1C2P0DMR2 95 aa10.87□□□□□ -0.67
LSM6-201ENST00000296581 MRPS36P82909 103 aaKnown RBP10.87□□□□□ -0.67
LSM6-201ENST00000296581 C11orf86A6NJI1 115 aa10.87□□□□□ -0.67
LSM6-201ENST00000296581 PAX4O43316 350 aa10.87□□□□□ -0.67
LSM6-201ENST00000296581 VSIG2Q96IQ7 327 aa10.87□□□□□ -0.67
LSM6-201ENST00000296581 NOTCH1P46531 2555 aa10.86□□□□□ -0.67
LSM6-201ENST00000296581 PRB2P02812 416 aaPredicted RBP10.86□□□□□ -0.67
LSM6-201ENST00000296581 TMEM243Q9BU79 118 aa10.86□□□□□ -0.67
LSM6-201ENST00000296581 H7C423 109 aa10.86□□□□□ -0.67
LSM6-201ENST00000296581 C15orf53Q8NAA6 179 aa10.86□□□□□ -0.67
LSM6-201ENST00000296581 TRBV6-8A0A0A6YYG3 113 aa10.85□□□□□ -0.67
LSM6-201ENST00000296581 SLC25A20O43772 301 aa10.84□□□□□ -0.67
LSM6-201ENST00000296581 LOC107984640A0A0U1RRK4 108 aa10.84□□□□□ -0.67
LSM6-201ENST00000296581 F5H768 121 aa10.83□□□□□ -0.68
LSM6-201ENST00000296581 DGAT2L7PQ6IED9 249 aa10.83□□□□□ -0.68
LSM6-201ENST00000296581 A4D1N5 150 aa10.83□□□□□ -0.68
LSM6-201ENST00000296581 RNASE13Q5GAN3 156 aaKnown RBP10.83□□□□□ -0.68
LSM6-201ENST00000296581 CHCHD5Q9BSY4 110 aa10.83□□□□□ -0.68
LSM6-201ENST00000296581 NBEAL1Q6ZS30 2694 aa10.83□□□□□ -0.68
LSM6-201ENST00000296581 A0A0J9YY99 117 aa10.82□□□□□ -0.68
LSM6-201ENST00000296581 A0A0J9YXV3 536 aa10.82□□□□□ -0.68
LSM6-201ENST00000296581 UBE2L6O14933 153 aa10.82□□□□□ -0.68
LSM6-201ENST00000296581 TM2D3Q9BRN9 247 aa10.82□□□□□ -0.68
LSM6-201ENST00000296581 TRAV8-4A0A0B4J246 113 aa10.81□□□□□ -0.68
LSM6-201ENST00000296581 C9JAW5 83 aa10.81□□□□□ -0.68
LSM6-201ENST00000296581 MGAM2Q2M2H8 2515 aa10.81□□□□□ -0.68
LSM6-201ENST00000296581 HTN3P15516 51 aa10.8□□□□□ -0.68
LSM6-201ENST00000296581 FAM19A5Q7Z5A7 132 aaPredicted RBP10.8□□□□□ -0.68
LSM6-201ENST00000296581 NTN5Q8WTR8 489 aaPredicted RBP10.8□□□□□ -0.68
LSM6-201ENST00000296581 CDC42SE2Q9NRR3 84 aa10.8□□□□□ -0.68
LSM6-201ENST00000296581 A0A0J9YWU9 116 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 ZNF22P17026 224 aaPredicted RBP10.79□□□□□ -0.68
LSM6-201ENST00000296581 SRSF9Q13242 221 aaKnown RBP eCLIP10.79□□□□□ -0.68
LSM6-201ENST00000296581 TMEM170BQ5T4T1 132 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 TINCRA0A1B0GVN0 87 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 J3KT08 172 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 HERVK_113P61574 105 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 DEFB121Q5J5C9 76 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 TMEM101Q96IK0 257 aa10.79□□□□□ -0.68
LSM6-201ENST00000296581 TMEM223A0PJW6 202 aa10.78□□□□□ -0.68
LSM6-201ENST00000296581 MRPL23Q16540 153 aaKnown RBP10.78□□□□□ -0.68
LSM6-201ENST00000296581 FAM19A3Q7Z5A8 133 aa10.78□□□□□ -0.68
LSM6-201ENST00000296581 PLEKHB2Q96CS7 222 aa10.78□□□□□ -0.68
LSM6-201ENST00000296581 A0A096LPF7 62 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 SCGB1D4Q6XE38 83 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 C10orf126Q8N4M7 172 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 TENM3Q9P273 2699 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 ZNF815PA8K554 130 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 RPL13AP40429 203 aaKnown RBP10.77□□□□□ -0.69
LSM6-201ENST00000296581 Q6ZTC4 211 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 ICOSQ9Y6W8 199 aa10.77□□□□□ -0.69
LSM6-201ENST00000296581 H3BNG1 76 aa10.76□□□□□ -0.69
LSM6-201ENST00000296581 TIRAPP58753 221 aa10.76□□□□□ -0.69
LSM6-201ENST00000296581 A0A1B0GX51 115 aa10.75□□□□□ -0.69
LSM6-201ENST00000296581 CFC1BP0CG36 223 aa10.75□□□□□ -0.69
LSM6-201ENST00000296581 CFC1P0CG37 223 aa10.75□□□□□ -0.69
LSM6-201ENST00000296581 C9orf153Q5TBE3 101 aa10.75□□□□□ -0.69
LSM6-201ENST00000296581 MRAPQ8TCY5 172 aa10.75□□□□□ -0.69
LSM6-201ENST00000296581 IGLV5-45A0A087WSX0 123 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 TRBV7-7A0A0K0K1E9 115 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 TEX49A0A1B0GTD5 131 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 C11orf45Q8TAV5 145 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 IGLV4-60A0A075B6I1 120 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 HERVK_113P63121 156 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 LINC00242Q5T6M2 205 aa10.74□□□□□ -0.69
LSM6-201ENST00000296581 A0A1B0GUV1 79 aa10.73□□□□□ -0.69
LSM6-201ENST00000296581 LINC01600Q96MT4 127 aa10.73□□□□□ -0.69
LSM6-201ENST00000296581 LEPROTO15243 131 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms