RNA–Protein interactions for RNA: ENST00000292478.8

PTCD1-201, Transcript of pentatricopeptide repeat domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD1, Length 5,582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1-201ENST00000292478 SVIPQ8NHG7 77 aa9.27□□□□□ -0.92
PTCD1-201ENST00000292478 CSDC2Q9Y534 153 aaKnown RBP9.27□□□□□ -0.92
PTCD1-201ENST00000292478 PRB2P02812 416 aaPredicted RBP9.27□□□□□ -0.93
PTCD1-201ENST00000292478 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.27□□□□□ -0.93
PTCD1-201ENST00000292478 POM121L12Q8N7R1 296 aa9.27□□□□□ -0.93
PTCD1-201ENST00000292478 CCKP06307 115 aa9.26□□□□□ -0.93
PTCD1-201ENST00000292478 ZNF706Q9Y5V0 76 aaPredicted RBP9.26□□□□□ -0.93
PTCD1-201ENST00000292478 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.26□□□□□ -0.93
PTCD1-201ENST00000292478 Q6ZQY7 126 aa9.25□□□□□ -0.93
PTCD1-201ENST00000292478 C20orf197Q8N268 126 aa9.25□□□□□ -0.93
PTCD1-201ENST00000292478 BEAN1Q3B7T3 259 aa9.25□□□□□ -0.93
PTCD1-201ENST00000292478 CCDC168Q8NDH2 2452 aa9.25□□□□□ -0.93
PTCD1-201ENST00000292478 PRM2P04554 102 aa9.24□□□□□ -0.93
PTCD1-201ENST00000292478 AMELXQ99217 191 aa9.24□□□□□ -0.93
PTCD1-201ENST00000292478 ZNF73O43830 326 aaPredicted RBP9.24□□□□□ -0.93
PTCD1-201ENST00000292478 IGHV4-30-4P0DP06 118 aa9.24□□□□□ -0.93
PTCD1-201ENST00000292478 FAM236DA0A1B0GTK5 79 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 LRCOL1A6NCL2 159 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 SMIM1B2RUZ4 78 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 NDUFC1O43677 76 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 FAM236CP0DP71 79 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 A0A1W2PPR1 153 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 EDN2P20800 178 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 ATP5EP56381 51 aaPredicted RBP9.23□□□□□ -0.93
PTCD1-201ENST00000292478 C7orf33Q8WU49 177 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 LINC00474Q9P2X8 69 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 C1orf158Q8N1D5 194 aa9.23□□□□□ -0.93
PTCD1-201ENST00000292478 FAM240AA0A1B0GVK7 77 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 EGFEM1PQ0D2K5 195 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 PLXNB1O43157 2135 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 IGLV2-18A0A075B6J9 118 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 DSCAML1Q8TD84 2053 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 CSPG4Q6UVK1 2322 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 F8WDY8 70 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 SERP2Q8N6R1 65 aa9.22□□□□□ -0.93
PTCD1-201ENST00000292478 CYSRT1A8MQ03 144 aa9.21□□□□□ -0.93
PTCD1-201ENST00000292478 RPL28P46779 137 aaKnown RBP9.21□□□□□ -0.94
PTCD1-201ENST00000292478 USP17L23D6RBM5 183 aa9.21□□□□□ -0.94
PTCD1-201ENST00000292478 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.21□□□□□ -0.94
PTCD1-201ENST00000292478 IGKV2-28A0A075B6P5 120 aa9.21□□□□□ -0.94
PTCD1-201ENST00000292478 IGKV2D-28P01615 120 aa9.21□□□□□ -0.94
PTCD1-201ENST00000292478 NAV3Q8IVL0 2385 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 KRTAP10-9P60411 292 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 Q6JHZ5 121 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 FHL2Q14192 279 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 SCXQ7RTU7 201 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 Q6Q795 121 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 LINC01561Q8N1V8 128 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 TANC2Q9HCD6 1990 aa9.2□□□□□ -0.94
PTCD1-201ENST00000292478 A0A096LNJ9 63 aa9.19□□□□□ -0.94
PTCD1-201ENST00000292478 A0A0J9YWU9 116 aa9.18□□□□□ -0.94
PTCD1-201ENST00000292478 LINC00526Q96FQ7 95 aa9.18□□□□□ -0.94
PTCD1-201ENST00000292478 EXPH5Q8NEV8 1989 aa9.18□□□□□ -0.94
PTCD1-201ENST00000292478 A0A096LNI7 61 aa9.18□□□□□ -0.94
PTCD1-201ENST00000292478 NANOS2P60321 138 aaKnown RBP9.17□□□□□ -0.94
PTCD1-201ENST00000292478 A0A1B0GUV1 79 aa9.17□□□□□ -0.94
PTCD1-201ENST00000292478 EML5Q05BV3 1969 aa9.17□□□□□ -0.94
PTCD1-201ENST00000292478 UTRNP46939 3433 aa9.17□□□□□ -0.94
PTCD1-201ENST00000292478 DNAH12Q6ZR08 3092 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 COX6A2Q02221 97 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 C3orf84H3BNL1 204 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 TSPEAR-AS2P59090 65 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 PTPN13Q12923 2485 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 FAM19A3Q7Z5A8 133 aa9.16□□□□□ -0.94
PTCD1-201ENST00000292478 LINC01546A6NGU7 62 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 ADAMTS20P59510 1910 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 RAI1Q7Z5J4 1906 aaPredicted RBP9.15□□□□□ -0.94
PTCD1-201ENST00000292478 COX7CP15954 63 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 OXLD1Q5BKU9 147 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 UNQ6190/PRO20217Q6UXQ8 127 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 NDUFC2-KCTD14E9PQ53 114 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 Q8N814 137 aa9.15□□□□□ -0.94
PTCD1-201ENST00000292478 NTM-AS1Q6ZSK4 140 aa9.15□□□□□ -0.95
PTCD1-201ENST00000292478 NAV2Q8IVL1 2488 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 LINC00694P0DN24 101 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 XGP55808 180 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 IGLV4-60A0A075B6I1 120 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 Q8N2B8 174 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 V9GYY9 64 aa9.14□□□□□ -0.95
PTCD1-201ENST00000292478 WFDC10BQ8IUB3 73 aa9.13□□□□□ -0.95
PTCD1-201ENST00000292478 PRR15LQ9BU68 103 aa9.13□□□□□ -0.95
PTCD1-201ENST00000292478 PLAC8L1A1L4L8 177 aa9.13□□□□□ -0.95
PTCD1-201ENST00000292478 NUPR2A6NF83 97 aa9.13□□□□□ -0.95
PTCD1-201ENST00000292478 M0QXV9 152 aa9.12□□□□□ -0.95
PTCD1-201ENST00000292478 RPL37AP8A6NKH3 93 aa9.12□□□□□ -0.95
PTCD1-201ENST00000292478 KIF25-AS1Q9Y6Z4 181 aa9.12□□□□□ -0.95
PTCD1-201ENST00000292478 C2orf48Q96LS8 159 aa9.12□□□□□ -0.95
PTCD1-201ENST00000292478 MRPL55Q7Z7F7 128 aaKnown RBP9.11□□□□□ -0.95
PTCD1-201ENST00000292478 ADAMTSL4-AS1Q5T5F5 129 aa9.11□□□□□ -0.95
PTCD1-201ENST00000292478 SMR3AQ99954 134 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 ARHGAP32A7KAX9 2087 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 TRBV10-3A0A0K0K1G6 114 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 Q6ZSN1 163 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 PPDPFQ9H3Y8 114 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 SERP1Q9Y6X1 66 aa9.1□□□□□ -0.95
PTCD1-201ENST00000292478 WDR87Q6ZQQ6 2873 aa9.09□□□□□ -0.95
PTCD1-201ENST00000292478 SPTSSBQ8NFR3 76 aa9.09□□□□□ -0.95
PTCD1-201ENST00000292478 BRK1Q8WUW1 75 aa9.09□□□□□ -0.95
PTCD1-201ENST00000292478 FAM19A4Q96LR4 140 aa9.09□□□□□ -0.95
PTCD1-201ENST00000292478 PCNTO95613 3336 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms