RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 Q6ZTI0 123 aa6.58□□□□□ -1.36
PDGFC-201ENST00000274071 RPL36ALQ969Q0 106 aaKnown RBP6.58□□□□□ -1.36
PDGFC-201ENST00000274071 COL12A1Q99715 3063 aa6.58□□□□□ -1.36
PDGFC-201ENST00000274071 IGLV5-45A0A087WSX0 123 aa6.57□□□□□ -1.36
PDGFC-201ENST00000274071 CLEC19AQ6UXS0 136 aa6.57□□□□□ -1.36
PDGFC-201ENST00000274071 FBXL19-AS1Q494R0 122 aa6.57□□□□□ -1.36
PDGFC-201ENST00000274071 ACACBO00763 2458 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 DAD1P61803 113 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 KAAG1Q9UBP8 84 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 JMJD7-PLA2G4BH0Y9G9 81 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 ADORA2A-AS1P86434 159 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 SPTBN1Q01082 2364 aaKnown RBP6.56□□□□□ -1.36
PDGFC-201ENST00000274071 CCDC140Q96MF4 163 aa6.56□□□□□ -1.36
PDGFC-201ENST00000274071 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.55□□□□□ -1.36
PDGFC-201ENST00000274071 MRPL55Q7Z7F7 128 aaKnown RBP6.55□□□□□ -1.36
PDGFC-201ENST00000274071 CACNA1BQ00975 2339 aa6.55□□□□□ -1.36
PDGFC-201ENST00000274071 HRNRQ86YZ3 2850 aaPredicted RBP6.55□□□□□ -1.36
PDGFC-201ENST00000274071 IGHV3-38A0A0C4DH36 116 aa6.55□□□□□ -1.36
PDGFC-201ENST00000274071 LYNX1G3V0Z9 82 aa6.55□□□□□ -1.36
PDGFC-201ENST00000274071 LYNX1P0DP58 116 aa6.55□□□□□ -1.36
PDGFC-201ENST00000274071 LINC01547P58512 204 aaPredicted RBP6.55□□□□□ -1.36
PDGFC-201ENST00000274071 ZFYVE26Q68DK2 2539 aa6.55□□□□□ -1.36
PDGFC-201ENST00000274071 IGHV1OR15-1A0A075B7D0 117 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 KLLNB2CW77 178 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 TMEM254Q8TBM7 123 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 CHCHD7Q9BUK0 85 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 MED13LQ71F56 2210 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 SND1-IT1Q9HBX3 110 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 PKD1L2Q7Z442 2459 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 IGHV3-16A0A0C4DH30 117 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 Q6ZTC4 211 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 Q8N3U1 123 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 Q9UF83 564 aa6.54□□□□□ -1.36
PDGFC-201ENST00000274071 ASH1LQ9NR48 2969 aaKnown RBP6.53□□□□□ -1.36
PDGFC-201ENST00000274071 SMIM1B2RUZ4 78 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 HAMPP81172 84 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 STHQ8IWL8 128 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 DPM3Q9P2X0 92 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 HIVEP3Q5T1R4 2406 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 IGHV7-81A0A0B4J1V7 117 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 RBM12B-AS1Q9P1G2 102 aa6.53□□□□□ -1.36
PDGFC-201ENST00000274071 PROK1P58294 105 aa6.52□□□□□ -1.37
PDGFC-201ENST00000274071 LINC00242Q5T6M2 205 aa6.52□□□□□ -1.37
PDGFC-201ENST00000274071 LINC00467Q9BRT7 94 aa6.52□□□□□ -1.37
PDGFC-201ENST00000274071 CACNA1AO00555 2505 aa6.52□□□□□ -1.37
PDGFC-201ENST00000274071 IGHV3-73A0A0B4J1V6 119 aa6.52□□□□□ -1.37
PDGFC-201ENST00000274071 IGKV3-7A0A075B6H7 116 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 IGHV3OR16-12A0A075B7B8 117 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 Q6ZRP5 223 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 BBC3Q96PG8 261 aaPredicted RBP6.51□□□□□ -1.37
PDGFC-201ENST00000274071 SPTAN1Q13813 2472 aaKnown RBP6.51□□□□□ -1.37
PDGFC-201ENST00000274071 LRCOL1A6NCL2 159 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 ECSCRQ19T08 205 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 LY6HO94772 140 aa6.51□□□□□ -1.37
PDGFC-201ENST00000274071 SORL1Q92673 2214 aa6.5□□□□□ -1.37
PDGFC-201ENST00000274071 FUSP35637 526 aaKnown RBP eCLIP6.5□□□□□ -1.37
PDGFC-201ENST00000274071 Q1T7F1 81 aa6.5□□□□□ -1.37
PDGFC-201ENST00000274071 TMEM256-PLSCR3K7ERE1 68 aa6.5□□□□□ -1.37
PDGFC-201ENST00000274071 NREPQ16612 68 aa6.5□□□□□ -1.37
PDGFC-201ENST00000274071 C11orf45Q8TAV5 145 aa6.5□□□□□ -1.37
PDGFC-201ENST00000274071 EPG5Q9HCE0 2579 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 K7EQG2 157 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 M0R2N4 97 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 PSPHP1O15172 72 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 Q6ZVQ6 151 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 LINC00167Q96N53 147 aa6.49□□□□□ -1.37
PDGFC-201ENST00000274071 A8MU10 97 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 DYNLRB2Q8TF09 96 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 G3V318 75 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 CCL18P55774 89 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 VPS13CQ709C8 3753 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 DGAT2L7PQ6IED9 249 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 Q6ZQT0 140 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 Q8N6K4 173 aa6.48□□□□□ -1.37
PDGFC-201ENST00000274071 C11orf68Q9H3H3 251 aaKnown RBP6.48□□□□□ -1.37
PDGFC-201ENST00000274071 PRYO14603 147 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 ERC2-IT1O76042 136 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 PRB1P04280 392 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 RNASE1P07998 156 aaKnown RBP6.47□□□□□ -1.37
PDGFC-201ENST00000274071 CXCL6P80162 114 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 C11orf71Q6IPW1 123 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 Q8N814 137 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 hDV103S1A0JD37 113 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 ATP6V0E1O15342 81 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 KLK9Q2XQG4 91 aa6.47□□□□□ -1.37
PDGFC-201ENST00000274071 CFAP46Q8IYW2 2715 aa6.46□□□□□ -1.37
PDGFC-201ENST00000274071 AKAP6Q13023 2319 aa6.46□□□□□ -1.37
PDGFC-201ENST00000274071 TRBV10-1A0A0K0K1A3 114 aa6.46□□□□□ -1.37
PDGFC-201ENST00000274071 KTN1-AS1Q86SY8 53 aa6.46□□□□□ -1.37
PDGFC-201ENST00000274071 Q8N9W7 124 aa6.46□□□□□ -1.37
PDGFC-201ENST00000274071 A0A1W2PPR1 153 aa6.46□□□□□ -1.38
PDGFC-201ENST00000274071 ODF3BA8MYP8 253 aa6.46□□□□□ -1.38
PDGFC-201ENST00000274071 MINOS1Q5TGZ0 78 aa6.46□□□□□ -1.38
PDGFC-201ENST00000274071 ZNF843Q8N446 348 aa6.46□□□□□ -1.38
PDGFC-201ENST00000274071 BPY2O14599 106 aa6.45□□□□□ -1.38
PDGFC-201ENST00000274071 Q6ZSN1 163 aa6.45□□□□□ -1.38
PDGFC-201ENST00000274071 GNLYP22749 145 aa6.45□□□□□ -1.38
PDGFC-201ENST00000274071 LINC00158P58513 81 aa6.45□□□□□ -1.38
PDGFC-201ENST00000274071 C19orf54Q5BKX5 351 aa6.45□□□□□ -1.38
PDGFC-201ENST00000274071 UBE2E2Q96LR5 201 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms