RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 IGHV3OR16-9A0A0B4J2B5 98 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 LINC01549A6NIU2 74 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 COX7A2LO14548 114 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 SERF1AO75920 110 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 SLPIP03973 132 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 GCSHP23434 173 aa8.3□□□□□ -1.08
SS18-202ENST00000269138 NUPR1O60356 82 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 PAPPA-AS1Q5QFB9 102 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 FAM19A2Q8N3H0 131 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 GVQW2A0A096LPI5 108 aaPredicted RBP8.29□□□□□ -1.08
SS18-202ENST00000269138 IGHV1-58A0A0C4DH39 117 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.29□□□□□ -1.08
SS18-202ENST00000269138 MALP21145 153 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 CST9LQ9H4G1 147 aa8.29□□□□□ -1.08
SS18-202ENST00000269138 LRP1BQ9NZR2 4599 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 A0A0J9YXV3 536 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BKO60814 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HSBP1O75506 76 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BJP06899 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BOP23527 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BBP33778 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BDP58876 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BCP62807 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST2H2BEQ16778 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BHQ93079 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BNQ99877 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 HIST1H2BMQ99879 126 aa8.28□□□□□ -1.08
SS18-202ENST00000269138 PMVKQ15126 192 aa8.27□□□□□ -1.09
SS18-202ENST00000269138 FAM19A3Q7Z5A8 133 aa8.27□□□□□ -1.09
SS18-202ENST00000269138 NDUFA6P56556 154 aa8.26□□□□□ -1.09
SS18-202ENST00000269138 A0A087WZ39 114 aa8.25□□□□□ -1.09
SS18-202ENST00000269138 ATP5LO75964 103 aa8.25□□□□□ -1.09
SS18-202ENST00000269138 CNBPP62633 177 aaKnown RBP8.25□□□□□ -1.09
SS18-202ENST00000269138 FAM30AQ9NZY2 134 aa8.25□□□□□ -1.09
SS18-202ENST00000269138 IGLV4-69A0A075B6H9 119 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 IGHV3-64A0A075B6Q5 118 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 C9orf163Q8N9P6 203 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 CDKN2A-AS1Q9UH64 79 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 ZNF561-AS1K7EIQ3 104 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 APOMO95445 188 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 HERVK_113P63121 156 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 ORAOV1Q8WV07 137 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 IFI27L1Q96BM0 104 aa8.24□□□□□ -1.09
SS18-202ENST00000269138 GEMIN7Q9H840 131 aaKnown RBP8.24□□□□□ -1.09
SS18-202ENST00000269138 TINCRA0A1B0GVN0 87 aa8.23□□□□□ -1.09
SS18-202ENST00000269138 SEC11AP67812 179 aa8.23□□□□□ -1.09
SS18-202ENST00000269138 HAMPP81172 84 aa8.23□□□□□ -1.09
SS18-202ENST00000269138 SPAG11BQ08648 103 aa8.23□□□□□ -1.09
SS18-202ENST00000269138 LCE2DQ5TA82 110 aaPredicted RBP8.22□□□□□ -1.09
SS18-202ENST00000269138 LINC00469Q8N7U9 141 aa8.22□□□□□ -1.09
SS18-202ENST00000269138 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.21□□□□□ -1.1
SS18-202ENST00000269138 IGLC3P0DOY3 106 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 FABP4P15090 132 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 XGP55808 180 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 SYCNQ0VAF6 134 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 SDIM1Q6ZPB5 146 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 LINC01561Q8N1V8 128 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 OR10D4PQ8NGN7 298 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 KIAA1109Q2LD37 5005 aa8.21□□□□□ -1.1
SS18-202ENST00000269138 IGLV5-45A0A087WSX0 123 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 CDK2AP2O75956 126 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 LEPROTL1O95214 131 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 KIAA0087Q14695 138 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 Q6ZRU5 148 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 CARD19Q96LW7 228 aa8.2□□□□□ -1.1
SS18-202ENST00000269138 Q6ZSA8 131 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 C2orf48Q96LS8 159 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 CAMK2N2Q96S95 79 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 CHAC1Q9BUX1 264 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 CHTOPQ9Y3Y2 248 aaKnown RBP8.19□□□□□ -1.1
SS18-202ENST00000269138 APOBP04114 4563 aaKnown RBP8.19□□□□□ -1.1
SS18-202ENST00000269138 C11orf86A6NJI1 115 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 PANO1I0J062 215 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 C10orf25Q5T742 122 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 KRTAP17-1Q9BYP8 105 aa8.19□□□□□ -1.1
SS18-202ENST00000269138 TRAV12-1A0A0B4J245 112 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 SMIM1B2RUZ4 78 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 H0Y8G0 127 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 SPINK8P0C7L1 97 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 ZNF22P17026 224 aaPredicted RBP8.18□□□□□ -1.1
SS18-202ENST00000269138 COA6Q5JTJ3 125 aaKnown RBP8.18□□□□□ -1.1
SS18-202ENST00000269138 C2orf82Q6UX34 121 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 UNQ6190/PRO20217Q6UXQ8 127 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 PACRGQ96M98 296 aaPredicted RBP8.18□□□□□ -1.1
SS18-202ENST00000269138 TOMM7Q9P0U1 55 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 HSPB8Q9UJY1 196 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.18□□□□□ -1.1
SS18-202ENST00000269138 DNAH8Q96JB1 4490 aa8.18□□□□□ -1.1
SS18-202ENST00000269138 CHTF8P0CG12 524 aa8.17□□□□□ -1.1
SS18-202ENST00000269138 MRPL35Q9NZE8 188 aaKnown RBP8.17□□□□□ -1.1
SS18-202ENST00000269138 RYR1P21817 5038 aa8.16□□□□□ -1.1
SS18-202ENST00000269138 F8VRH5 84 aa8.15□□□□□ -1.1
SS18-202ENST00000269138 NDUFA1O15239 70 aa8.15□□□□□ -1.1
SS18-202ENST00000269138 PRSS2P07478 247 aa8.15□□□□□ -1.1
SS18-202ENST00000269138 ODF1Q14990 250 aa8.15□□□□□ -1.1
SS18-202ENST00000269138 HSPG2P98160 4391 aa8.15□□□□□ -1.11
SS18-202ENST00000269138 F8WDY8 70 aa8.14□□□□□ -1.11
SS18-202ENST00000269138 H3BRM9 83 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms