RNA–Protein interactions for RNA: ENST00000244302.8

HIF3A-201, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 1 (best)

Gene HIF3A, Length 2,101 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-201ENST00000244302 PRO0255Q9UI72 69 aa9□□□□□ -0.97
HIF3A-201ENST00000244302 TSPAN13O95857 204 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 C11orf45Q8TAV5 145 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 C11orf68Q9H3H3 251 aaKnown RBP8.99□□□□□ -0.97
HIF3A-201ENST00000244302 TRBV20-1A0A075B6N2 111 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 TRBV10-1A0A0K0K1A3 114 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 LINC00694P0DN24 101 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 DNAJC30Q96LL9 226 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 DNAH7Q8WXX0 4024 aa8.99□□□□□ -0.97
HIF3A-201ENST00000244302 TMEM170BQ5T4T1 132 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 SH2D6Q7Z4S9 175 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 B9D2Q9BPU9 175 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 J3QQQ9 107 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 APOMO95445 188 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 IGHV3-30P01768 117 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 IGHV3-30-5P0DP03 117 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 LGALS3P17931 250 aaKnown RBP8.98□□□□□ -0.97
HIF3A-201ENST00000244302 RNASE13Q5GAN3 156 aaKnown RBP8.98□□□□□ -0.97
HIF3A-201ENST00000244302 FAM104AQ969W3 186 aa8.98□□□□□ -0.97
HIF3A-201ENST00000244302 STARD9Q9P2P6 4700 aa8.97□□□□□ -0.97
HIF3A-201ENST00000244302 LEPROTO15243 131 aa8.97□□□□□ -0.97
HIF3A-201ENST00000244302 C20orf203Q8NBC4 194 aa8.97□□□□□ -0.97
HIF3A-201ENST00000244302 VCX2Q9H322 139 aa8.97□□□□□ -0.97
HIF3A-201ENST00000244302 AMELXQ99217 191 aa8.96□□□□□ -0.97
HIF3A-201ENST00000244302 TSPEAR-AS2P59090 65 aa8.96□□□□□ -0.98
HIF3A-201ENST00000244302 C10orf126Q8N4M7 172 aa8.96□□□□□ -0.98
HIF3A-201ENST00000244302 GTSF1LQ9H1H1 148 aa8.96□□□□□ -0.98
HIF3A-201ENST00000244302 LOC107984156A0A0G2JMH3 177 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 TMEM223A0PJW6 202 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 CIDEAO60543 219 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 FOXI1Q12951 378 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 ARL17AQ8IVW1 177 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 DYNC2H1Q8NCM8 4307 aaKnown RBP8.95□□□□□ -0.98
HIF3A-201ENST00000244302 CFC1BP0CG36 223 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 CFC1P0CG37 223 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 PSMB2P49721 201 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 DAZ4Q86SG3 579 aaKnown RBP8.95□□□□□ -0.98
HIF3A-201ENST00000244302 Q8N3U1 123 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 DAZ3Q9NR90 486 aaKnown RBP8.95□□□□□ -0.98
HIF3A-201ENST00000244302 PRO1854Q9UHT4 67 aa8.95□□□□□ -0.98
HIF3A-201ENST00000244302 DEFB131BA0A096LNP1 70 aa8.94□□□□□ -0.98
HIF3A-201ENST00000244302 M0QXV9 152 aa8.93□□□□□ -0.98
HIF3A-201ENST00000244302 SMCPP49901 116 aaPredicted RBP8.93□□□□□ -0.98
HIF3A-201ENST00000244302 PYGO1Q9Y3Y4 419 aa8.93□□□□□ -0.98
HIF3A-201ENST00000244302 A0A0B4J2C4 111 aa8.93□□□□□ -0.98
HIF3A-201ENST00000244302 PPDPFLQ8WWR9 84 aa8.93□□□□□ -0.98
HIF3A-201ENST00000244302 ZNF22P17026 224 aaPredicted RBP8.92□□□□□ -0.98
HIF3A-201ENST00000244302 SMAGPQ0VAQ4 97 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 GAGE6Q13070 117 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 TEN1Q86WV5 123 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 MTURNQ8N3F0 131 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 IGLV4-3A0A075B6K6 122 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.92□□□□□ -0.98
HIF3A-201ENST00000244302 UBE2D4Q9Y2X8 147 aa8.92□□□□□ -0.98
HIF3A-201ENST00000244302 TRBV6-8A0A0A6YYG3 113 aa8.91□□□□□ -0.98
HIF3A-201ENST00000244302 TCL1BO95988 128 aa8.9□□□□□ -0.98
HIF3A-201ENST00000244302 A0A1B0GV72 72 aa8.9□□□□□ -0.99
HIF3A-201ENST00000244302 Q6ZUT4 128 aa8.9□□□□□ -0.99
HIF3A-201ENST00000244302 IGLV4-60A0A075B6I1 120 aa8.89□□□□□ -0.99
HIF3A-201ENST00000244302 A0A0J9YXV3 536 aa8.89□□□□□ -0.99
HIF3A-201ENST00000244302 A4D1N5 150 aa8.89□□□□□ -0.99
HIF3A-201ENST00000244302 IGHV3-33P01772 117 aa8.89□□□□□ -0.99
HIF3A-201ENST00000244302 MRPS36P82909 103 aaKnown RBP8.89□□□□□ -0.99
HIF3A-201ENST00000244302 CHCHD5Q9BSY4 110 aa8.89□□□□□ -0.99
HIF3A-201ENST00000244302 SCGB1C2P0DMR2 95 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 MRPL23Q16540 153 aaKnown RBP8.88□□□□□ -0.99
HIF3A-201ENST00000244302 LYPD5Q6UWN5 251 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 TMEM243Q9BU79 118 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 ERG28Q9UKR5 140 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 ICOSQ9Y6W8 199 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 DNAH1Q9P2D7 4330 aa8.88□□□□□ -0.99
HIF3A-201ENST00000244302 SPANXA1Q9NS26 97 aa8.87□□□□□ -0.99
HIF3A-201ENST00000244302 TMEM262E9PQX1 116 aa8.87□□□□□ -0.99
HIF3A-201ENST00000244302 ESRGQ1W209 222 aa8.87□□□□□ -0.99
HIF3A-201ENST00000244302 TIMM21Q9BVV7 248 aa8.87□□□□□ -0.99
HIF3A-201ENST00000244302 CDIP1Q9H305 208 aa8.87□□□□□ -0.99
HIF3A-201ENST00000244302 SFTA2Q6UW10 78 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 LINC01600Q96MT4 127 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 IGKV3OR2-268A0A0C4DH90 116 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 A0A0J9YXY3 114 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 IGHV3-30-3P0DP02 117 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 MUSTN1Q8IVN3 82 aa8.86□□□□□ -0.99
HIF3A-201ENST00000244302 IGHV3-64A0A075B6Q5 118 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 TRAV10A0A0B4J240 114 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 TINCRA0A1B0GVN0 87 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 UBE2L6O14933 153 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 CARD19Q96LW7 228 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 SPANXDQ9BXN6 97 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 SPANXCQ9NY87 97 aa8.85□□□□□ -0.99
HIF3A-201ENST00000244302 IGHV1-58A0A0C4DH39 117 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 ATXN8Q156A1 80 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 DGAT2L7PQ6IED9 249 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 CLPSL2Q6UWE3 100 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 CDC42SE2Q9NRR3 84 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 DNAH10Q8IVF4 4471 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 TRBV30A0A0K0K1B3 111 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 SLC25A20O43772 301 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 ANKRD29Q8N6D5 301 aa8.84□□□□□ -0.99
HIF3A-201ENST00000244302 NHLRC4P0CG21 123 aaPredicted RBP8.83□□□□□ -1
HIF3A-201ENST00000244302 WFDC10BQ8IUB3 73 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms