RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 LY6EQ16553 131 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 SERTAD4-AS1Q5TG53 156 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 C9orf47Q6ZRZ4 202 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 LINC00269Q8N2A0 174 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 ZNF580Q9UK33 172 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 PCNX1Q96RV3 2341 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 LY6G6EA0A0G2JKS1 128 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 BPY2O14599 106 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 CGB3P0DN86 165 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 CGB7P0DN87 165 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 NKAPP1Q8N9T2 125 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 U3KQA8 63 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 DSCAMO60469 2012 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 OTOGLQ3ZCN5 2332 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 IGF1P05019 195 aa4.21□□□□□ -1.74
SCN1A-216ENST00000637968 PRB2P02812 416 aaPredicted RBP4.2□□□□□ -1.74
SCN1A-216ENST00000637968 Q8N2B8 174 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 C6orf223Q8N319 242 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 ZFAND3Q9H8U3 227 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 PRRC2AP48634 2157 aaKnown RBP4.2□□□□□ -1.74
SCN1A-216ENST00000637968 TRBV10-1A0A0K0K1A3 114 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 LITAFQ99732 161 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.2□□□□□ -1.741e-6■■■■□ 25.1
SCN1A-216ENST00000637968 A0A087WYN8 130 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 IGHV1-3A0A0C4DH29 117 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 TRBV6-5A0A0K0K1A5 114 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 GOLGB1Q14789 3259 aaKnown RBP4.2□□□□□ -1.74
SCN1A-216ENST00000637968 LCA10Q71F78 164 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 GPHB5Q86YW7 130 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 FAM218AQ96MZ4 157 aa4.2□□□□□ -1.74
SCN1A-216ENST00000637968 NAV3Q8IVL0 2385 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 IBA57-AS1B1ANH7 110 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 LHBP01229 141 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-216ENST00000637968 SMIM11BQ8TCY0 68 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 SRCAPQ6ZRS2 3230 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 MED13LQ71F56 2210 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 TRAV10A0A0B4J240 114 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 PINLYPA6NC86 204 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 B4DSR2 109 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 M0R378 163 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 TM2D3Q9BRN9 247 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 NCOR2Q9Y618 2525 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 DKK1O94907 266 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 GRNP28799 593 aaKnown RBP4.19□□□□□ -1.74
SCN1A-216ENST00000637968 LINC01547P58512 204 aaPredicted RBP4.19□□□□□ -1.74
SCN1A-216ENST00000637968 CXCL6P80162 114 aa4.19□□□□□ -1.74
SCN1A-216ENST00000637968 CDKN2A-AS1Q9UH64 79 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 ERC2-IT1O76042 136 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 SCXQ7RTU7 201 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 COX7B2Q8TF08 81 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 COL4A2P08572 1712 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 C2orf16Q68DN1 1984 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 H3BQ85 93 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 IGHV1-8P0DP01 117 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 C7orf65Q6ZTY9 151 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 PRR15LQ9BU68 103 aa4.18□□□□□ -1.74
SCN1A-216ENST00000637968 IGHV3-11P01762 117 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 Q1T7F1 81 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 ATP11AUNQ6ZP68 121 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-216ENST00000637968 IGKV2-29A2NJV5 120 aaPredicted RBP4.17□□□□□ -1.74
SCN1A-216ENST00000637968 IGHV3-73A0A0B4J1V6 119 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 HCG22E2RYF7 251 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 FAM229BQ4G0N7 80 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 MDFIQ99750 246 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 LIMD2Q9BT23 127 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 LINC00574Q9H8X3 128 aa4.17□□□□□ -1.74
SCN1A-216ENST00000637968 E7EQL1 145 aa4.16□□□□□ -1.74
SCN1A-216ENST00000637968 ITLN2Q8WWU7 325 aaPredicted RBP4.16□□□□□ -1.74
SCN1A-216ENST00000637968 SMAD5-AS1Q9Y6J3 95 aa4.16□□□□□ -1.74
SCN1A-216ENST00000637968 TRAV22A0A0B4J277 110 aa4.16□□□□□ -1.74
SCN1A-216ENST00000637968 A8MUN3 132 aa4.16□□□□□ -1.74
SCN1A-216ENST00000637968 ESM1Q9NQ30 184 aa4.16□□□□□ -1.74
SCN1A-216ENST00000637968 C8orf87E5RJ46 101 aa4.15□□□□□ -1.74
SCN1A-216ENST00000637968 NDUFB1O75438 58 aa4.15□□□□□ -1.74
SCN1A-216ENST00000637968 LINC01356Q8N9X3 169 aa4.15□□□□□ -1.74
SCN1A-216ENST00000637968 TRGV2A0A075B6R0 118 aa4.15□□□□□ -1.74
SCN1A-216ENST00000637968 IGLV11-55A0A075B6I3 123 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 M0QY20 66 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 CTSGP08311 255 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 K7EMT4 169 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 IGHV1-46P01743 117 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 UNQ9165/PRO28630Q6UXU0 137 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 KLK9Q9UKQ9 250 aa4.15□□□□□ -1.75
SCN1A-216ENST00000637968 A0A0C4DFX4 3053 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 MSMPQ1L6U9 139 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 C22orf34Q6ZV56 151 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 SPG11Q96JI7 2443 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 MP68P56378 58 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 PRR4Q16378 134 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 LINC00588Q9Y4M8 146 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 SORL1Q92673 2214 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 LYNX1G3V0Z9 82 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 LYNX1P0DP58 116 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 RNASE3P12724 160 aaKnown RBP4.14□□□□□ -1.75
SCN1A-216ENST00000637968 NTM-AS1Q6ZSK4 140 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 HIGD2AQ9BW72 106 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 PTPN13Q12923 2485 aa4.14□□□□□ -1.75
SCN1A-216ENST00000637968 hDV103S1A0JD37 113 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms