RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 MAP1LC3AQ9H492 121 aa12.65□□□□□ -0.38
CLN3-260ENST00000637578 PRR34Q9NV39 138 aa12.65□□□□□ -0.38
CLN3-260ENST00000637578 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.64□□□□□ -0.39
CLN3-260ENST00000637578 LOC389332A0A1B0GUA5 103 aa12.64□□□□□ -0.39
CLN3-260ENST00000637578 IGKV2-29A2NJV5 120 aaPredicted RBP12.64□□□□□ -0.39
CLN3-260ENST00000637578 PRSS47A8MTI9 375 aa12.64□□□□□ -0.39
CLN3-260ENST00000637578 RBX1P62877 108 aa12.64□□□□□ -0.39
CLN3-260ENST00000637578 UBE2L6O14933 153 aa12.64□□□□□ -0.39
CLN3-260ENST00000637578 ESDP10768 282 aa12.64□□□□□ -0.39
CLN3-260ENST00000637578 ALKBH7Q9BT30 221 aaPredicted RBP12.64□□□□□ -0.39
CLN3-260ENST00000637578 C1orf43Q9BWL3 253 aa12.63□□□□□ -0.39
CLN3-260ENST00000637578 DNAH8Q96JB1 4490 aa12.63□□□□□ -0.39
CLN3-260ENST00000637578 TCAPO15273 167 aa12.62□□□□□ -0.39
CLN3-260ENST00000637578 CRPP02741 224 aa12.62□□□□□ -0.39
CLN3-260ENST00000637578 MIAQ16674 131 aa12.62□□□□□ -0.39
CLN3-260ENST00000637578 FAM30AQ9NZY2 134 aa12.62□□□□□ -0.39
CLN3-260ENST00000637578 FAT1Q14517 4588 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 A0A1B0GUV1 79 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 COLCA2A8K830 154 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 EPM2AB3EWF7 344 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 S100A1P23297 94 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 Q6ZSA8 131 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 Q8N8P6 123 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 IGLV4-60A0A075B6I1 120 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.6□□□□□ -0.39
CLN3-260ENST00000637578 H7C423 109 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 FGF6P10767 208 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 KRTAP26-1Q6PEX3 210 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 LINC00269Q8N2A0 174 aa12.6□□□□□ -0.39
CLN3-260ENST00000637578 RAB5AP20339 215 aa12.59□□□□□ -0.39
CLN3-260ENST00000637578 IFI27P40305 119 aaPredicted RBP12.59□□□□□ -0.39
CLN3-260ENST00000637578 NXT2Q9NPJ8 142 aaKnown RBP12.59□□□□□ -0.39
CLN3-260ENST00000637578 AMMECR1LQ6DCA0 310 aa12.58□□□□□ -0.4
CLN3-260ENST00000637578 RNASEKQ6P5S7 137 aaKnown RBP12.58□□□□□ -0.4
CLN3-260ENST00000637578 C20orf203Q8NBC4 194 aa12.58□□□□□ -0.4
CLN3-260ENST00000637578 C14orf177Q52M58 125 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 VPS13BQ7Z7G8 4022 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 RPL39P62891 51 aaKnown RBP12.56□□□□□ -0.4
CLN3-260ENST00000637578 HAMPP81172 84 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 REG3AQ06141 175 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 Q5VSD8 79 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 CLPSL2Q6UWE3 100 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 MRPL52Q86TS9 123 aaKnown RBP12.56□□□□□ -0.4
CLN3-260ENST00000637578 PRSS3P2Q8NHM4 247 aa12.56□□□□□ -0.4
CLN3-260ENST00000637578 SMR3BP02814 79 aaPredicted RBP12.55□□□□□ -0.4
CLN3-260ENST00000637578 TRGC2P03986 189 aa12.55□□□□□ -0.4
CLN3-260ENST00000637578 ZNF25P17030 456 aaPredicted RBP12.55□□□□□ -0.4
CLN3-260ENST00000637578 C18orf32Q8TCD1 76 aa12.55□□□□□ -0.4
CLN3-260ENST00000637578 TMEM18Q96B42 140 aa12.54□□□□□ -0.4
CLN3-260ENST00000637578 UBE2D4Q9Y2X8 147 aa12.54□□□□□ -0.4
CLN3-260ENST00000637578 USP17L23D6RBM5 183 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 K7EMI3 77 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 LINC01620Q4KN68 170 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 ORMDL2Q53FV1 153 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 OR5A1Q8NGJ0 315 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 TMEM101Q96IK0 257 aa12.53□□□□□ -0.4
CLN3-260ENST00000637578 TRAV8-4A0A0B4J246 113 aa12.52□□□□□ -0.4
CLN3-260ENST00000637578 LINC01546A6NGU7 62 aa12.51□□□□□ -0.41
CLN3-260ENST00000637578 PRSS1P07477 247 aa12.51□□□□□ -0.41
CLN3-260ENST00000637578 DGAT2L7PQ6IED9 249 aa12.51□□□□□ -0.41
CLN3-260ENST00000637578 FA2HQ7L5A8 372 aa12.51□□□□□ -0.41
CLN3-260ENST00000637578 TIMM21Q9BVV7 248 aa12.51□□□□□ -0.41
CLN3-260ENST00000637578 CSDC2Q9Y534 153 aaKnown RBP12.51□□□□□ -0.41
CLN3-260ENST00000637578 SMAGPQ0VAQ4 97 aa12.5□□□□□ -0.41
CLN3-260ENST00000637578 CDC42SE2Q9NRR3 84 aa12.5□□□□□ -0.41
CLN3-260ENST00000637578 IGLV10-54A0A075B6I4 117 aa12.49□□□□□ -0.41
CLN3-260ENST00000637578 C2orf66Q6UXQ4 117 aa12.49□□□□□ -0.41
CLN3-260ENST00000637578 URB1-AS1Q96HZ7 61 aa12.49□□□□□ -0.41
CLN3-260ENST00000637578 SPANXA1Q9NS26 97 aa12.49□□□□□ -0.41
CLN3-260ENST00000637578 IGKV3OR2-268A0A0C4DH90 116 aa12.48□□□□□ -0.41
CLN3-260ENST00000637578 FAM229AH3BQW9 127 aa12.48□□□□□ -0.41
CLN3-260ENST00000637578 Q6ZUT4 128 aa12.48□□□□□ -0.41
CLN3-260ENST00000637578 ZNF664Q8N3J9 261 aa12.48□□□□□ -0.41
CLN3-260ENST00000637578 CYSLTR1Q9Y271 337 aa12.48□□□□□ -0.41
CLN3-260ENST00000637578 RNASE13Q5GAN3 156 aaKnown RBP12.47□□□□□ -0.41
CLN3-260ENST00000637578 FAM104AQ969W3 186 aa12.47□□□□□ -0.41
CLN3-260ENST00000637578 LINC00614P0C842 121 aa12.47□□□□□ -0.41
CLN3-260ENST00000637578 INAFM2P0DMQ5 153 aa12.47□□□□□ -0.41
CLN3-260ENST00000637578 OPRPNQ99935 248 aaPredicted RBP12.47□□□□□ -0.41
CLN3-260ENST00000637578 AP5S1Q9NUS5 200 aa12.47□□□□□ -0.41
CLN3-260ENST00000637578 SRRM2Q9UQ35 2752 aaKnown RBP12.45□□□□□ -0.42
CLN3-260ENST00000637578 SCXQ7RTU7 201 aa12.45□□□□□ -0.42
CLN3-260ENST00000637578 CHAC1Q9BUX1 264 aa12.45□□□□□ -0.42
CLN3-260ENST00000637578 PYGO1Q9Y3Y4 419 aa12.45□□□□□ -0.42
CLN3-260ENST00000637578 MRPS36P82909 103 aaKnown RBP12.44□□□□□ -0.42
CLN3-260ENST00000637578 C9orf163Q8N9P6 203 aa12.44□□□□□ -0.42
CLN3-260ENST00000637578 TOMM6Q96B49 74 aa12.44□□□□□ -0.42
CLN3-260ENST00000637578 G0S2P27469 103 aa12.43□□□□□ -0.42
CLN3-260ENST00000637578 RAB5BP61020 215 aa12.43□□□□□ -0.42
CLN3-260ENST00000637578 IGLV4-3A0A075B6K6 122 aa12.43□□□□□ -0.42
CLN3-260ENST00000637578 IGIPA6NJ69 53 aa12.43□□□□□ -0.42
CLN3-260ENST00000637578 LINC00959A0A1B0GUT2 108 aa12.42□□□□□ -0.42
CLN3-260ENST00000637578 CNBPP62633 177 aaKnown RBP12.42□□□□□ -0.42
CLN3-260ENST00000637578 BAGE3Q86Y29 109 aa12.42□□□□□ -0.42
CLN3-260ENST00000637578 A0A096LNJ9 63 aa12.41□□□□□ -0.42
CLN3-260ENST00000637578 PMCHL1Q16048 86 aa12.41□□□□□ -0.42
CLN3-260ENST00000637578 CIRBP-AS1Q8TBR5 109 aa12.41□□□□□ -0.42
CLN3-260ENST00000637578 CHCHD10Q8WYQ3 142 aaPredicted RBP12.41□□□□□ -0.42
CLN3-260ENST00000637578 TRAV13-1A0A0B4J241 112 aa12.4□□□□□ -0.42
CLN3-260ENST00000637578 LINC00528Q8N1L1 170 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms