RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 DPH3Q96FX2 82 aa7.53□□□□□ -1.2
CLN3-257ENST00000637110 RNF213Q63HN8 5207 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.52□□□□□ -1.21
CLN3-257ENST00000637110 TRBV27A0A0K0K1C4 114 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 C7orf77A4D0Y5 90 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 F8W036 122 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 PPP1R2P9O14990 202 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 SUMO2P61956 95 aaKnown RBP7.52□□□□□ -1.21
CLN3-257ENST00000637110 MRPL51Q4U2R6 128 aaKnown RBP7.52□□□□□ -1.21
CLN3-257ENST00000637110 FAM104BQ5XKR9 115 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 C9orf163Q8N9P6 203 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 CIRBP-AS1Q8TBR5 109 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 KIR2DL4Q99706 377 aa7.52□□□□□ -1.21
CLN3-257ENST00000637110 ESDP10768 282 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 XCL1P47992 114 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 HBBP68871 147 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 SMAGPQ0VAQ4 97 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 SS18Q15532 418 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 HIGD2BQ4VC39 106 aa7.51□□□□□ -1.21
CLN3-257ENST00000637110 LRP1Q07954 4544 aaKnown RBP7.5□□□□□ -1.21
CLN3-257ENST00000637110 LINC00862A6NCI5 91 aa7.5□□□□□ -1.21
CLN3-257ENST00000637110 NRACQ8N912 160 aa7.5□□□□□ -1.21
CLN3-257ENST00000637110 IGHV3-64A0A075B6Q5 118 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 LINC00959A0A1B0GUT2 108 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 CCL25O15444 150 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 ZNF664Q8N3J9 261 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 TMEM18Q96B42 140 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 CDC42SE2Q9NRR3 84 aa7.49□□□□□ -1.21
CLN3-257ENST00000637110 D6R8Y8 96 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 TNFRSF6BO95407 300 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 MT-ND4LP03901 98 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 CNBPP62633 177 aaKnown RBP7.48□□□□□ -1.21
CLN3-257ENST00000637110 PNRC1Q12796 327 aaPredicted RBP7.48□□□□□ -1.21
CLN3-257ENST00000637110 SDIM1Q6ZPB5 146 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 MRPL52Q86TS9 123 aaKnown RBP7.48□□□□□ -1.21
CLN3-257ENST00000637110 C15orf56Q8N910 161 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 C20orf78Q9BR46 151 aa7.48□□□□□ -1.21
CLN3-257ENST00000637110 FOXI1Q12951 378 aa7.47□□□□□ -1.21
CLN3-257ENST00000637110 RNASE13Q5GAN3 156 aaKnown RBP7.47□□□□□ -1.21
CLN3-257ENST00000637110 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.47□□□□□ -1.21
CLN3-257ENST00000637110 TRBV24-1A0A075B6N3 115 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 A0A1B0GXF2 115 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 TCAPO15273 167 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 PPBPP02775 128 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 SLPIP03973 132 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 MALP21145 153 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 TMEM136Q6ZRR5 245 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 ATP5L2Q7Z4Y8 100 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 ANAPC16Q96DE5 110 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 UBE2D4Q9Y2X8 147 aa7.46□□□□□ -1.22
CLN3-257ENST00000637110 TRAV13-1A0A0B4J241 112 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 IGHV1-58A0A0C4DH39 117 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 NPYP01303 97 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 RAB5AP20339 215 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 RPL37AP61513 92 aaKnown RBP7.45□□□□□ -1.22
CLN3-257ENST00000637110 CLLU1Q5K131 121 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 ORMDL3Q8N138 153 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 PRELID3AQ96N28 172 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 SMIM2Q9BVW6 85 aa7.45□□□□□ -1.22
CLN3-257ENST00000637110 GVQW2A0A096LPI5 108 aaPredicted RBP7.44□□□□□ -1.22
CLN3-257ENST00000637110 C1orf196B1AJZ1 125 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 PANO1I0J062 215 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 ZNF561-AS1K7EIQ3 104 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 CHTF8P0CG12 524 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 COX6A2Q02221 97 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 CD164L2Q6UWJ8 174 aa7.44□□□□□ -1.22
CLN3-257ENST00000637110 CSDC2Q9Y534 153 aaKnown RBP7.44□□□□□ -1.22
CLN3-257ENST00000637110 IGKV2-24A0A0C4DH68 120 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 LOC389332A0A1B0GUA5 103 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 PHOX2AO14813 284 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 RPL39P62891 51 aaKnown RBP7.43□□□□□ -1.22
CLN3-257ENST00000637110 RPL32P62910 135 aaKnown RBP7.43□□□□□ -1.22
CLN3-257ENST00000637110 Q6ZUT4 128 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 LINC00526Q96FQ7 95 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 FAT3Q8TDW7 4589 aa7.43□□□□□ -1.22
CLN3-257ENST00000637110 COX7A2LO14548 114 aa7.42□□□□□ -1.22
CLN3-257ENST00000637110 MAJINQ3KP22 176 aa7.42□□□□□ -1.22
CLN3-257ENST00000637110 TIMM21Q9BVV7 248 aa7.42□□□□□ -1.22
CLN3-257ENST00000637110 A0A087WYN8 130 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 UQCC3Q6UW78 93 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 C5orf38Q86SI9 138 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 PRSS3P2Q8NHM4 247 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 CARD19Q96LW7 228 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 MAP1LC3AQ9H492 121 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 SPANXA1Q9NS26 97 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 DNAH8Q96JB1 4490 aa7.41□□□□□ -1.22
CLN3-257ENST00000637110 APOMO95445 188 aa7.4□□□□□ -1.22
CLN3-257ENST00000637110 IFI27P40305 119 aaPredicted RBP7.4□□□□□ -1.22
CLN3-257ENST00000637110 SYCNQ0VAF6 134 aa7.4□□□□□ -1.22
CLN3-257ENST00000637110 SPACA4Q8TDM5 124 aa7.4□□□□□ -1.22
CLN3-257ENST00000637110 OPRPNQ99935 248 aaPredicted RBP7.4□□□□□ -1.22
CLN3-257ENST00000637110 CTDSP1Q9GZU7 261 aa7.4□□□□□ -1.22
CLN3-257ENST00000637110 PKIGQ9Y2B9 76 aa7.4□□□□□ -1.22
CLN3-257ENST00000637110 IGLV4-69A0A075B6H9 119 aa7.39□□□□□ -1.23
CLN3-257ENST00000637110 TMEM218A2RU14 115 aa7.39□□□□□ -1.23
CLN3-257ENST00000637110 KRTAP10-4P60372 401 aaPredicted RBP7.39□□□□□ -1.23
CLN3-257ENST00000637110 IFITM2Q01629 132 aa7.39□□□□□ -1.23
CLN3-257ENST00000637110 CIRBPQ14011 172 aaKnown RBP7.39□□□□□ -1.23
CLN3-257ENST00000637110 CAMK2N2Q96S95 79 aa7.39□□□□□ -1.23
CLN3-257ENST00000637110 LAMTOR2Q9Y2Q5 125 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms