RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 SH2D6Q7Z4S9 175 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 TIMM21Q9BVV7 248 aa12.8□□□□□ -0.36
CLN3-254ENST00000637050 A0A096LPF7 62 aa12.79□□□□□ -0.36
CLN3-254ENST00000637050 FAM104AQ969W3 186 aa12.79□□□□□ -0.36
CLN3-254ENST00000637050 PMCHL2Q9BQD1 86 aa12.79□□□□□ -0.36
CLN3-254ENST00000637050 IGLV4-3A0A075B6K6 122 aa12.78□□□□□ -0.36
CLN3-254ENST00000637050 A0A087WX48 190 aa12.78□□□□□ -0.36
CLN3-254ENST00000637050 OPRPNQ99935 248 aaPredicted RBP12.78□□□□□ -0.36
CLN3-254ENST00000637050 TRAV10A0A0B4J240 114 aa12.77□□□□□ -0.36
CLN3-254ENST00000637050 H7C423 109 aa12.77□□□□□ -0.36
CLN3-254ENST00000637050 PTTG1IPP53801 180 aa12.77□□□□□ -0.36
CLN3-254ENST00000637050 CEMP1Q6PRD7 247 aaPredicted RBP12.77□□□□□ -0.36
CLN3-254ENST00000637050 PMVKQ15126 192 aa12.77□□□□□ -0.37
CLN3-254ENST00000637050 ATOH7Q8N100 152 aa12.77□□□□□ -0.37
CLN3-254ENST00000637050 HUWE1Q7Z6Z7 4374 aaKnown RBP12.76□□□□□ -0.37
CLN3-254ENST00000637050 PRSS29PA6NIE9 313 aa12.76□□□□□ -0.37
CLN3-254ENST00000637050 FGF6P10767 208 aa12.76□□□□□ -0.37
CLN3-254ENST00000637050 CSDC2Q9Y534 153 aaKnown RBP12.76□□□□□ -0.37
CLN3-254ENST00000637050 SMAGPQ0VAQ4 97 aa12.75□□□□□ -0.37
CLN3-254ENST00000637050 PAPPA-AS1Q5QFB9 102 aa12.75□□□□□ -0.37
CLN3-254ENST00000637050 CST9LQ9H4G1 147 aa12.75□□□□□ -0.37
CLN3-254ENST00000637050 UBE2L6O14933 153 aa12.74□□□□□ -0.37
CLN3-254ENST00000637050 MRPS36P82909 103 aaKnown RBP12.74□□□□□ -0.37
CLN3-254ENST00000637050 ZC2HC1BQ5TFG8 222 aa12.74□□□□□ -0.37
CLN3-254ENST00000637050 AMELXQ99217 191 aa12.74□□□□□ -0.37
CLN3-254ENST00000637050 MRPL35Q9NZE8 188 aaKnown RBP12.74□□□□□ -0.37
CLN3-254ENST00000637050 CHCHD5Q9BSY4 110 aa12.73□□□□□ -0.37
CLN3-254ENST00000637050 F8VRH5 84 aa12.73□□□□□ -0.37
CLN3-254ENST00000637050 UBE2V1Q13404 147 aa12.73□□□□□ -0.37
CLN3-254ENST00000637050 DGAT2L7PQ6IED9 249 aa12.73□□□□□ -0.37
CLN3-254ENST00000637050 VCX2Q9H322 139 aa12.73□□□□□ -0.37
CLN3-254ENST00000637050 GAGE6Q13070 117 aa12.72□□□□□ -0.37
CLN3-254ENST00000637050 Q6ZUT4 128 aa12.72□□□□□ -0.37
CLN3-254ENST00000637050 VAMP8Q9BV40 100 aa12.72□□□□□ -0.37
CLN3-254ENST00000637050 TRAV9-2A0A087WT02 112 aa12.71□□□□□ -0.37
CLN3-254ENST00000637050 DPM2O94777 84 aa12.71□□□□□ -0.37
CLN3-254ENST00000637050 TIRAPP58753 221 aa12.71□□□□□ -0.37
CLN3-254ENST00000637050 AMMECR1LQ6DCA0 310 aa12.71□□□□□ -0.37
CLN3-254ENST00000637050 MEGF8Q7Z7M0 2845 aa12.71□□□□□ -0.37
CLN3-254ENST00000637050 COL7A1Q02388 2944 aa12.71□□□□□ -0.38
CLN3-254ENST00000637050 IGKCP01834 107 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 MAJINQ3KP22 176 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 LYPD5Q6UWN5 251 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 PLNP26678 52 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 RNASE13Q5GAN3 156 aaKnown RBP12.7□□□□□ -0.38
CLN3-254ENST00000637050 LELP1Q5T871 98 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 OR5A1Q8NGJ0 315 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 CDC42SE2Q9NRR3 84 aa12.7□□□□□ -0.38
CLN3-254ENST00000637050 DNAH9Q9NYC9 4486 aa12.69□□□□□ -0.38
CLN3-254ENST00000637050 IGLV4-69A0A075B6H9 119 aa12.69□□□□□ -0.38
CLN3-254ENST00000637050 TMEM101Q96IK0 257 aa12.69□□□□□ -0.38
CLN3-254ENST00000637050 PAM16Q9Y3D7 125 aa12.69□□□□□ -0.38
CLN3-254ENST00000637050 hDV102S1A0JD36 115 aa12.68□□□□□ -0.38
CLN3-254ENST00000637050 BATFQ16520 125 aa12.68□□□□□ -0.38
CLN3-254ENST00000637050 VPS25Q9BRG1 176 aa12.68□□□□□ -0.38
CLN3-254ENST00000637050 C15orf53Q8NAA6 179 aa12.67□□□□□ -0.38
CLN3-254ENST00000637050 UQCR10Q9UDW1 63 aa12.67□□□□□ -0.38
CLN3-254ENST00000637050 A0A1B0GUV1 79 aa12.67□□□□□ -0.38
CLN3-254ENST00000637050 SPATA45Q537H7 98 aa12.67□□□□□ -0.38
CLN3-254ENST00000637050 IGLV4-60A0A075B6I1 120 aa12.66□□□□□ -0.38
CLN3-254ENST00000637050 C11orf86A6NJI1 115 aa12.65□□□□□ -0.38
CLN3-254ENST00000637050 TMEM262E9PQX1 116 aa12.65□□□□□ -0.38
CLN3-254ENST00000637050 IGLC3P0DOY3 106 aa12.65□□□□□ -0.38
CLN3-254ENST00000637050 NFE4Q86UQ8 179 aa12.65□□□□□ -0.38
CLN3-254ENST00000637050 CCL25O15444 150 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 RNF151Q2KHN1 245 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 MPV17L2Q567V2 206 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 STPG4Q8N801 248 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 A0A0J9YXV3 536 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 UBE2D1P51668 147 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 ESRGQ1W209 222 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 COX11Q9Y6N1 276 aa12.64□□□□□ -0.39
CLN3-254ENST00000637050 TMEM238C9JI98 176 aa12.63□□□□□ -0.39
CLN3-254ENST00000637050 K7ERU9 68 aa12.63□□□□□ -0.39
CLN3-254ENST00000637050 IGLL5B9A064 214 aa12.62□□□□□ -0.39
CLN3-254ENST00000637050 CHAC1Q9BUX1 264 aa12.62□□□□□ -0.39
CLN3-254ENST00000637050 TRAV8-6A0A0B4J262 113 aa12.61□□□□□ -0.39
CLN3-254ENST00000637050 HNRNPA3P51991 378 aaKnown RBP12.61□□□□□ -0.39
CLN3-254ENST00000637050 FAM19A3Q7Z5A8 133 aa12.61□□□□□ -0.39
CLN3-254ENST00000637050 TINCRA0A1B0GVN0 87 aa12.61□□□□□ -0.39
CLN3-254ENST00000637050 MRPS16Q9Y3D3 137 aaKnown RBP12.6□□□□□ -0.39
CLN3-254ENST00000637050 STAB2Q8WWQ8 2551 aa12.6□□□□□ -0.39
CLN3-254ENST00000637050 TRAV13-1A0A0B4J241 112 aa12.59□□□□□ -0.39
CLN3-254ENST00000637050 Q8N3U1 123 aa12.59□□□□□ -0.39
CLN3-254ENST00000637050 PRKDCP78527 4128 aaKnown RBP12.58□□□□□ -0.4
CLN3-254ENST00000637050 ZNF22P17026 224 aaPredicted RBP12.58□□□□□ -0.4
CLN3-254ENST00000637050 LINC00242Q5T6M2 205 aa12.58□□□□□ -0.4
CLN3-254ENST00000637050 TMEM170BQ5T4T1 132 aa12.57□□□□□ -0.4
CLN3-254ENST00000637050 WFDC10BQ8IUB3 73 aa12.57□□□□□ -0.4
CLN3-254ENST00000637050 SEC11AP67812 179 aa12.57□□□□□ -0.4
CLN3-254ENST00000637050 OCIAD2Q56VL3 154 aa12.57□□□□□ -0.4
CLN3-254ENST00000637050 IGLV5-45A0A087WSX0 123 aa12.56□□□□□ -0.4
CLN3-254ENST00000637050 TCTAP57738 103 aa12.56□□□□□ -0.4
CLN3-254ENST00000637050 GEMIN7Q9H840 131 aaKnown RBP12.56□□□□□ -0.4
CLN3-254ENST00000637050 IGKV2D-26A0A0A0MRZ7 120 aa12.55□□□□□ -0.4
CLN3-254ENST00000637050 ANGP03950 147 aaKnown RBP12.55□□□□□ -0.4
CLN3-254ENST00000637050 HERVK_113P63121 156 aa12.55□□□□□ -0.4
CLN3-254ENST00000637050 COX6A2Q02221 97 aa12.55□□□□□ -0.4
CLN3-254ENST00000637050 LINC00959A0A1B0GUT2 108 aa12.54□□□□□ -0.4
CLN3-254ENST00000637050 TMEM223A0PJW6 202 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 119.8 ms