RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 M0R2P5 195 aa10.81□□□□□ -0.68
CLN3-253ENST00000636977 IGHV3-30-3P0DP02 117 aa10.81□□□□□ -0.68
CLN3-253ENST00000636977 CCDC168Q8NDH2 2452 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 C5orf47Q569G3 176 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 LINC01587Q99440 93 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 PRO1854Q9UHT4 67 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 CHCHD7Q9BUK0 85 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 ITPR3Q14573 2671 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 C11orf72Q8NBR9 251 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 Q96MF0 132 aa10.8□□□□□ -0.68
CLN3-253ENST00000636977 A0A0J9YXY3 114 aa10.79□□□□□ -0.68
CLN3-253ENST00000636977 A8MTW9 85 aa10.79□□□□□ -0.68
CLN3-253ENST00000636977 TEX49A0A1B0GTD5 131 aa10.79□□□□□ -0.68
CLN3-253ENST00000636977 LYRM7Q5U5X0 104 aa10.79□□□□□ -0.68
CLN3-253ENST00000636977 LINC00467Q9BRT7 94 aa10.79□□□□□ -0.68
CLN3-253ENST00000636977 DYNLRB2Q8TF09 96 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 XCL2Q9UBD3 114 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 KLK5Q9Y337 293 aaPredicted RBP10.78□□□□□ -0.68
CLN3-253ENST00000636977 IGHV3OR16-12A0A075B7B8 117 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 TRAV8-4A0A0B4J246 113 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 DEFB114Q30KQ6 69 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 TMEM263Q8WUH6 116 aaKnown RBP10.78□□□□□ -0.68
CLN3-253ENST00000636977 JMJD1CQ15652 2540 aa10.78□□□□□ -0.68
CLN3-253ENST00000636977 A0A1W2PRX2 142 aa10.77□□□□□ -0.68
CLN3-253ENST00000636977 MRPS36P82909 103 aaKnown RBP10.77□□□□□ -0.68
CLN3-253ENST00000636977 ADAMTSL4-AS1Q5T5F5 129 aa10.77□□□□□ -0.68
CLN3-253ENST00000636977 Q8N2B8 174 aa10.77□□□□□ -0.68
CLN3-253ENST00000636977 TIMM21Q9BVV7 248 aa10.77□□□□□ -0.68
CLN3-253ENST00000636977 PYGO1Q9Y3Y4 419 aa10.77□□□□□ -0.68
CLN3-253ENST00000636977 C2CD3Q4AC94 2353 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 NPC2P61916 151 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 ZNF415Q09FC8 603 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 C4orf3Q8WVX3 66 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 UBE2D4Q9Y2X8 147 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 IGHV3-33P01772 117 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 DEFB113Q30KQ7 82 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 LITAFQ99732 161 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 EDA2RQ9HAV5 297 aa10.77□□□□□ -0.69
CLN3-253ENST00000636977 PEMTQ9UBM1 199 aa10.76□□□□□ -0.69
CLN3-253ENST00000636977 Q6ZSV7 163 aa10.75□□□□□ -0.69
CLN3-253ENST00000636977 SMIM9A6NGZ8 99 aa10.75□□□□□ -0.69
CLN3-253ENST00000636977 PRSS2P07478 247 aa10.74□□□□□ -0.69
CLN3-253ENST00000636977 Q1RN00 199 aa10.74□□□□□ -0.69
CLN3-253ENST00000636977 ODF3L2Q3SX64 289 aa10.74□□□□□ -0.69
CLN3-253ENST00000636977 SETXQ7Z333 2677 aaKnown RBP10.74□□□□□ -0.69
CLN3-253ENST00000636977 KRTAP1-3Q8IUG1 177 aa10.74□□□□□ -0.69
CLN3-253ENST00000636977 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.74□□□□□ -0.69
CLN3-253ENST00000636977 FLNAP21333 2647 aaKnown RBP10.74□□□□□ -0.69
CLN3-253ENST00000636977 C9orf153Q5TBE3 101 aa10.74□□□□□ -0.69
CLN3-253ENST00000636977 ZNF843Q8N446 348 aa10.73□□□□□ -0.69
CLN3-253ENST00000636977 TMEM126AQ9H061 195 aa10.73□□□□□ -0.69
CLN3-253ENST00000636977 NDUFA12Q9UI09 145 aa10.73□□□□□ -0.69
CLN3-253ENST00000636977 IGHV1-58A0A0C4DH39 117 aa10.73□□□□□ -0.69
CLN3-253ENST00000636977 IGHV3-53P01767 116 aa10.73□□□□□ -0.69
CLN3-253ENST00000636977 FAM19A5Q7Z5A7 132 aaPredicted RBP10.73□□□□□ -0.69
CLN3-253ENST00000636977 DAND5Q8N907 189 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 NDUFA7O95182 113 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 INSP01308 110 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 C1orf158Q8N1D5 194 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 VSIG2Q96IQ7 327 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 ACANP16112 2415 aa10.72□□□□□ -0.69
CLN3-253ENST00000636977 CDKN2A-AS1Q9UH64 79 aa10.71□□□□□ -0.69
CLN3-253ENST00000636977 FAM236AA0A1B0GUQ0 79 aa10.71□□□□□ -0.69
CLN3-253ENST00000636977 FAM236BA0A1B0GV22 79 aa10.71□□□□□ -0.69
CLN3-253ENST00000636977 COX6A2Q02221 97 aa10.71□□□□□ -0.69
CLN3-253ENST00000636977 BEAN1Q3B7T3 259 aa10.71□□□□□ -0.69
CLN3-253ENST00000636977 A0A0B4J2C4 111 aa10.71□□□□□ -0.7
CLN3-253ENST00000636977 TINCRA0A1B0GVN0 87 aa10.71□□□□□ -0.7
CLN3-253ENST00000636977 HIST2H2BCQ6DN03 193 aa10.71□□□□□ -0.7
CLN3-253ENST00000636977 RS1O15537 224 aa10.7□□□□□ -0.7
CLN3-253ENST00000636977 SBSPONQ8IVN8 264 aa10.7□□□□□ -0.7
CLN3-253ENST00000636977 SPANXA1Q9NS26 97 aa10.7□□□□□ -0.7
CLN3-253ENST00000636977 TRGV1A0A0A0MS02 117 aa10.7□□□□□ -0.7
CLN3-253ENST00000636977 WFDC11Q8NEX6 87 aa10.69□□□□□ -0.7
CLN3-253ENST00000636977 DNAJC30Q96LL9 226 aa10.69□□□□□ -0.7
CLN3-253ENST00000636977 ESM1Q9NQ30 184 aa10.69□□□□□ -0.7
CLN3-253ENST00000636977 MTORP42345 2549 aa10.69□□□□□ -0.7
CLN3-253ENST00000636977 TRIAP1O43715 76 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 Q6Q795 121 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 DNAJC9-AS1A6NH13 148 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 PIK3CD-AS1Q5SR53 167 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 Q6ZTI0 123 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 STHQ8IWL8 128 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 TRAV25A0A0B4J276 109 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 HERVK_113P63121 156 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 WFDC10AQ9H1F0 79 aa10.68□□□□□ -0.7
CLN3-253ENST00000636977 UBE2WQ96B02 151 aa10.67□□□□□ -0.7
CLN3-253ENST00000636977 ZNF625Q96I27 306 aaPredicted RBP10.67□□□□□ -0.7
CLN3-253ENST00000636977 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.66□□□□□ -0.7
CLN3-253ENST00000636977 A0A0U1RRA0 63 aa10.66□□□□□ -0.7
CLN3-253ENST00000636977 TMEM101Q96IK0 257 aa10.66□□□□□ -0.7
CLN3-253ENST00000636977 NTM-AS1Q6ZSK4 140 aa10.66□□□□□ -0.7
CLN3-253ENST00000636977 MIAQ16674 131 aa10.65□□□□□ -0.7
CLN3-253ENST00000636977 DGAT2L7PQ6IED9 249 aa10.65□□□□□ -0.7
CLN3-253ENST00000636977 TENM4Q6N022 2769 aa10.65□□□□□ -0.7
CLN3-253ENST00000636977 CCL24O00175 119 aa10.65□□□□□ -0.7
CLN3-253ENST00000636977 PLA2G2AP14555 144 aa10.65□□□□□ -0.7
CLN3-253ENST00000636977 CITED2Q99967 270 aaPredicted RBP10.65□□□□□ -0.71
CLN3-253ENST00000636977 LINC01620Q4KN68 170 aa10.64□□□□□ -0.71
CLN3-253ENST00000636977 SPANXDQ9BXN6 97 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 178 ms