RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 UBE2D4Q9Y2X8 147 aa13.45□□□□□ -0.26
PTCD3-220ENST00000627371 FABP9Q0Z7S8 132 aa13.44□□□□□ -0.26
PTCD3-220ENST00000627371 CSDC2Q9Y534 153 aaKnown RBP13.44□□□□□ -0.26
PTCD3-220ENST00000627371 WFDC2Q14508 124 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 KRTAP26-1Q6PEX3 210 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 CBLN2Q8IUK8 224 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 ALKBH7Q9BT30 221 aaPredicted RBP13.43□□□□□ -0.26
PTCD3-220ENST00000627371 TIMM21Q9BVV7 248 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 NXT2Q9NPJ8 142 aaKnown RBP13.43□□□□□ -0.26
PTCD3-220ENST00000627371 SMCO4Q9NRQ5 59 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 CDC42SE2Q9NRR3 84 aa13.43□□□□□ -0.26
PTCD3-220ENST00000627371 IGLV10-54A0A075B6I4 117 aa13.42□□□□□ -0.26
PTCD3-220ENST00000627371 K7EMI3 77 aa13.42□□□□□ -0.26
PTCD3-220ENST00000627371 RPL39P62891 51 aaKnown RBP13.42□□□□□ -0.26
PTCD3-220ENST00000627371 DGAT2L7PQ6IED9 249 aa13.42□□□□□ -0.26
PTCD3-220ENST00000627371 BAALCQ8WXS3 180 aa13.42□□□□□ -0.26
PTCD3-220ENST00000627371 TRAPPC1Q9Y5R8 145 aa13.42□□□□□ -0.26
PTCD3-220ENST00000627371 IGKV3OR2-268A0A0C4DH90 116 aa13.41□□□□□ -0.26
PTCD3-220ENST00000627371 ZNF664Q8N3J9 261 aa13.41□□□□□ -0.26
PTCD3-220ENST00000627371 Q8N814 137 aa13.41□□□□□ -0.26
PTCD3-220ENST00000627371 C16orf90A8MZG2 172 aa13.4□□□□□ -0.26
PTCD3-220ENST00000627371 LECT2O14960 151 aa13.4□□□□□ -0.26
PTCD3-220ENST00000627371 IFI27P40305 119 aaPredicted RBP13.4□□□□□ -0.26
PTCD3-220ENST00000627371 PGPEP1Q9NXJ5 209 aa13.4□□□□□ -0.26
PTCD3-220ENST00000627371 LRP1BQ9NZR2 4599 aa13.4□□□□□ -0.26
PTCD3-220ENST00000627371 ORMDL2Q53FV1 153 aa13.39□□□□□ -0.27
PTCD3-220ENST00000627371 CDPF1Q6NVV7 123 aa13.39□□□□□ -0.27
PTCD3-220ENST00000627371 SPANXA1Q9NS26 97 aa13.39□□□□□ -0.27
PTCD3-220ENST00000627371 Q6ZUT4 128 aa13.37□□□□□ -0.27
PTCD3-220ENST00000627371 NTN5Q8WTR8 489 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-220ENST00000627371 LINC00959A0A1B0GUT2 108 aa13.36□□□□□ -0.27
PTCD3-220ENST00000627371 FUSP35637 526 aaKnown RBP eCLIP13.36□□□□□ -0.27
PTCD3-220ENST00000627371 PRSS3P2Q8NHM4 247 aa13.36□□□□□ -0.27
PTCD3-220ENST00000627371 CHCHD10Q8WYQ3 142 aaPredicted RBP13.36□□□□□ -0.27
PTCD3-220ENST00000627371 MRPS36P82909 103 aaKnown RBP13.35□□□□□ -0.27
PTCD3-220ENST00000627371 C2orf66Q6UXQ4 117 aa13.35□□□□□ -0.27
PTCD3-220ENST00000627371 CYSLTR1Q9Y271 337 aa13.35□□□□□ -0.27
PTCD3-220ENST00000627371 PYGO1Q9Y3Y4 419 aa13.35□□□□□ -0.27
PTCD3-220ENST00000627371 GAGE12HA6NDE8 117 aa13.34□□□□□ -0.27
PTCD3-220ENST00000627371 USP17L23D6RBM5 183 aa13.34□□□□□ -0.27
PTCD3-220ENST00000627371 C14orf177Q52M58 125 aa13.34□□□□□ -0.27
PTCD3-220ENST00000627371 RNASE13Q5GAN3 156 aaKnown RBP13.34□□□□□ -0.27
PTCD3-220ENST00000627371 FAM104AQ969W3 186 aa13.34□□□□□ -0.27
PTCD3-220ENST00000627371 LINC01546A6NGU7 62 aa13.33□□□□□ -0.28
PTCD3-220ENST00000627371 SS18Q15532 418 aa13.33□□□□□ -0.28
PTCD3-220ENST00000627371 IGLV5-52A0A0A0MRZ9 124 aa13.32□□□□□ -0.28
PTCD3-220ENST00000627371 G0S2P27469 103 aa13.32□□□□□ -0.28
PTCD3-220ENST00000627371 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.31□□□□□ -0.28
PTCD3-220ENST00000627371 CCL25O15444 150 aa13.31□□□□□ -0.28
PTCD3-220ENST00000627371 XCL1P47992 114 aa13.31□□□□□ -0.28
PTCD3-220ENST00000627371 C18orf32Q8TCD1 76 aa13.31□□□□□ -0.28
PTCD3-220ENST00000627371 OPRPNQ99935 248 aaPredicted RBP13.31□□□□□ -0.28
PTCD3-220ENST00000627371 IGLV4-3A0A075B6K6 122 aa13.3□□□□□ -0.28
PTCD3-220ENST00000627371 C1orf196B1AJZ1 125 aa13.3□□□□□ -0.28
PTCD3-220ENST00000627371 FOXI1Q12951 378 aa13.3□□□□□ -0.28
PTCD3-220ENST00000627371 FA2HQ7L5A8 372 aa13.3□□□□□ -0.28
PTCD3-220ENST00000627371 TRAV13-1A0A0B4J241 112 aa13.29□□□□□ -0.28
PTCD3-220ENST00000627371 TOMM6Q96B49 74 aa13.29□□□□□ -0.28
PTCD3-220ENST00000627371 TMEM141Q96I45 108 aa13.29□□□□□ -0.28
PTCD3-220ENST00000627371 NPSP0C0P6 89 aa13.28□□□□□ -0.28
PTCD3-220ENST00000627371 CD164L2Q6UWJ8 174 aa13.28□□□□□ -0.28
PTCD3-220ENST00000627371 IGIPA6NJ69 53 aa13.27□□□□□ -0.29
PTCD3-220ENST00000627371 PRSS1P07477 247 aa13.27□□□□□ -0.29
PTCD3-220ENST00000627371 GCSHP23434 173 aa13.27□□□□□ -0.29
PTCD3-220ENST00000627371 APOBP04114 4563 aaKnown RBP13.27□□□□□ -0.29
PTCD3-220ENST00000627371 IFITM10A6NMD0 228 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 COLCA2A8K830 154 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 CFAP161Q6P656 301 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 C15orf56Q8N910 161 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 URB1-AS1Q96HZ7 61 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 AP5S1Q9NUS5 200 aa13.26□□□□□ -0.29
PTCD3-220ENST00000627371 LINC01549A6NIU2 74 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 LINC00614P0C842 121 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 Q6ZN92 141 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 TEX43Q6ZNM6 134 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 TIMM17AQ99595 171 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 KIAA1109Q2LD37 5005 aa13.25□□□□□ -0.29
PTCD3-220ENST00000627371 SCO1O75880 301 aa13.24□□□□□ -0.29
PTCD3-220ENST00000627371 TRGC2P03986 189 aa13.24□□□□□ -0.29
PTCD3-220ENST00000627371 KRTAP10-1P60331 282 aa13.24□□□□□ -0.29
PTCD3-220ENST00000627371 hDV102S1A0JD36 115 aa13.23□□□□□ -0.29
PTCD3-220ENST00000627371 RAB5BP61020 215 aa13.23□□□□□ -0.29
PTCD3-220ENST00000627371 ERASQ7Z444 233 aa13.23□□□□□ -0.29
PTCD3-220ENST00000627371 AMELXQ99217 191 aa13.23□□□□□ -0.29
PTCD3-220ENST00000627371 PAPPA-AS1Q5QFB9 102 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 LINC00173Q6ZV60 143 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 SCGB3A1Q96QR1 104 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 C2orf88Q9BSF0 95 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 VCX2Q9H322 139 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 DNAH8Q96JB1 4490 aa13.22□□□□□ -0.29
PTCD3-220ENST00000627371 IGHV1-58A0A0C4DH39 117 aa13.21□□□□□ -0.29
PTCD3-220ENST00000627371 RYR1P21817 5038 aa13.2□□□□□ -0.3
PTCD3-220ENST00000627371 GVQW2A0A096LPI5 108 aaPredicted RBP13.2□□□□□ -0.3
PTCD3-220ENST00000627371 COX7A2LO14548 114 aa13.2□□□□□ -0.3
PTCD3-220ENST00000627371 CDK2AP2O75956 126 aa13.2□□□□□ -0.3
PTCD3-220ENST00000627371 A0A096LNJ9 63 aa13.19□□□□□ -0.3
PTCD3-220ENST00000627371 UBE2D1P51668 147 aa13.19□□□□□ -0.3
PTCD3-220ENST00000627371 CNBPP62633 177 aaKnown RBP13.19□□□□□ -0.3
PTCD3-220ENST00000627371 HIGD2BQ4VC39 106 aa13.19□□□□□ -0.3
PTCD3-220ENST00000627371 ZC2HC1BQ5TFG8 222 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 127.3 ms