RNA–Protein interactions for RNA: ENST00000624931.1

PCF11-207, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

Gene PCF11, Length 1,720 nt, Biotype TEC, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-207ENST00000624931 DEFB114Q30KQ6 69 aa12.84□□□□□ -0.35
PCF11-207ENST00000624931 ZFAND6Q6FIF0 208 aa12.84□□□□□ -0.35
PCF11-207ENST00000624931 SPATA3Q8NHX4 192 aa12.84□□□□□ -0.35
PCF11-207ENST00000624931 A0A0J9YXY3 114 aa12.83□□□□□ -0.36
PCF11-207ENST00000624931 RPL13AP40429 203 aaKnown RBP12.83□□□□□ -0.36
PCF11-207ENST00000624931 MRPS36P82909 103 aaKnown RBP12.83□□□□□ -0.36
PCF11-207ENST00000624931 CITED1Q99966 193 aa12.83□□□□□ -0.36
PCF11-207ENST00000624931 SPANXDQ9BXN6 97 aa12.83□□□□□ -0.36
PCF11-207ENST00000624931 SPANXCQ9NY87 97 aa12.83□□□□□ -0.36
PCF11-207ENST00000624931 ATRQ13535 2644 aa12.83□□□□□ -0.36
PCF11-207ENST00000624931 TIMM21Q9BVV7 248 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 A0A0J9YXV3 536 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 TRBV10-2A0A0K0K1G8 114 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 PF4P02776 101 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 Q1RN00 199 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 LINC01620Q4KN68 170 aa12.82□□□□□ -0.36
PCF11-207ENST00000624931 COX6CP09669 75 aa12.81□□□□□ -0.36
PCF11-207ENST00000624931 SPANXA1Q9NS26 97 aa12.81□□□□□ -0.36
PCF11-207ENST00000624931 IGHV1-58A0A0C4DH39 117 aa12.8□□□□□ -0.36
PCF11-207ENST00000624931 IGHV3-30-3P0DP02 117 aa12.8□□□□□ -0.36
PCF11-207ENST00000624931 LINC00482Q8N8I6 264 aa12.8□□□□□ -0.36
PCF11-207ENST00000624931 OPRPNQ99935 248 aaPredicted RBP12.8□□□□□ -0.36
PCF11-207ENST00000624931 TINCRA0A1B0GVN0 87 aa12.79□□□□□ -0.36
PCF11-207ENST00000624931 TIMM17BO60830 172 aa12.79□□□□□ -0.36
PCF11-207ENST00000624931 Q6Q795 121 aa12.79□□□□□ -0.36
PCF11-207ENST00000624931 TRAV26-1A0A087WT03 109 aa12.79□□□□□ -0.36
PCF11-207ENST00000624931 TRAV12-2A0A075B6T6 113 aa12.78□□□□□ -0.36
PCF11-207ENST00000624931 EIF4EBP3O60516 100 aaPredicted RBP12.78□□□□□ -0.36
PCF11-207ENST00000624931 IFITM1P13164 125 aa12.78□□□□□ -0.36
PCF11-207ENST00000624931 MRPL23Q16540 153 aaKnown RBP12.78□□□□□ -0.36
PCF11-207ENST00000624931 TNFRSF18Q9Y5U5 241 aa12.78□□□□□ -0.36
PCF11-207ENST00000624931 H3BT86 120 aa12.77□□□□□ -0.36
PCF11-207ENST00000624931 SPINK13Q1W4C9 94 aa12.77□□□□□ -0.36
PCF11-207ENST00000624931 SORL1Q92673 2214 aa12.77□□□□□ -0.37
PCF11-207ENST00000624931 SNCGO76070 127 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 DEFB131AP59861 70 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 DEFB104AQ8WTQ1 72 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 DNAJC30Q96LL9 226 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 LITAFQ99732 161 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 ANAPC13Q9BS18 74 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 KNCNA6PVL3 124 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 A8MTW9 85 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 IGKV3-20P01619 116 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 MIAQ16674 131 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 SPXQ9BT56 116 aa12.76□□□□□ -0.37
PCF11-207ENST00000624931 GAGE2BQ13066 116 aa12.75□□□□□ -0.37
PCF11-207ENST00000624931 GAGE2EQ4V326 116 aa12.75□□□□□ -0.37
PCF11-207ENST00000624931 NTN5Q8WTR8 489 aaPredicted RBP12.75□□□□□ -0.37
PCF11-207ENST00000624931 MAP6D1Q9H9H5 199 aa12.75□□□□□ -0.37
PCF11-207ENST00000624931 GAGE2DQ9UEU5 116 aa12.75□□□□□ -0.37
PCF11-207ENST00000624931 NDUFA12Q9UI09 145 aa12.75□□□□□ -0.37
PCF11-207ENST00000624931 FBN1P35555 2871 aaKnown RBP12.74□□□□□ -0.37
PCF11-207ENST00000624931 TRAV8-4A0A0B4J246 113 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 H7C2G1 150 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 IGHV3-64A0A075B6Q5 118 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 H3BMM0 161 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 TRIAP1O43715 76 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 IGLV1-51P01701 117 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 UBE2WQ96B02 151 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 VSIG2Q96IQ7 327 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 ICOSQ9Y6W8 199 aa12.74□□□□□ -0.37
PCF11-207ENST00000624931 TRAV25A0A0B4J276 109 aa12.73□□□□□ -0.37
PCF11-207ENST00000624931 COPS9Q8WXC6 57 aa12.73□□□□□ -0.37
PCF11-207ENST00000624931 LINC00467Q9BRT7 94 aa12.73□□□□□ -0.37
PCF11-207ENST00000624931 PRSS2P07478 247 aa12.72□□□□□ -0.37
PCF11-207ENST00000624931 ZNF415Q09FC8 603 aa12.72□□□□□ -0.37
PCF11-207ENST00000624931 ODF3L2Q3SX64 289 aa12.72□□□□□ -0.37
PCF11-207ENST00000624931 VWFP04275 2813 aa12.72□□□□□ -0.37
PCF11-207ENST00000624931 TIRAPP58753 221 aa12.71□□□□□ -0.37
PCF11-207ENST00000624931 C2orf82Q6UX34 121 aa12.71□□□□□ -0.37
PCF11-207ENST00000624931 GAGE5Q13069 117 aa12.71□□□□□ -0.38
PCF11-207ENST00000624931 GAGE6Q13070 117 aa12.71□□□□□ -0.38
PCF11-207ENST00000624931 FAM104AQ969W3 186 aa12.71□□□□□ -0.38
PCF11-207ENST00000624931 FAM240AA0A1B0GVK7 77 aa12.7□□□□□ -0.38
PCF11-207ENST00000624931 CIRBPQ14011 172 aaKnown RBP12.7□□□□□ -0.38
PCF11-207ENST00000624931 DEFB121Q5J5C9 76 aa12.7□□□□□ -0.38
PCF11-207ENST00000624931 UBE2D4Q9Y2X8 147 aa12.7□□□□□ -0.38
PCF11-207ENST00000624931 RBMY1BA6NDE4 496 aaKnown RBP12.69□□□□□ -0.38
PCF11-207ENST00000624931 RBMY1EA6NEQ0 496 aaKnown RBP12.69□□□□□ -0.38
PCF11-207ENST00000624931 RBMY1DP0C7P1 496 aaKnown RBP12.69□□□□□ -0.38
PCF11-207ENST00000624931 CHCHD7Q9BUK0 85 aa12.69□□□□□ -0.38
PCF11-207ENST00000624931 WFDC10AQ9H1F0 79 aa12.69□□□□□ -0.38
PCF11-207ENST00000624931 SVIPQ8NHG7 77 aa12.68□□□□□ -0.38
PCF11-207ENST00000624931 IGLV5-45A0A087WSX0 123 aa12.68□□□□□ -0.38
PCF11-207ENST00000624931 TTC32Q5I0X7 151 aa12.68□□□□□ -0.38
PCF11-207ENST00000624931 C3orf56Q8N813 242 aa12.68□□□□□ -0.38
PCF11-207ENST00000624931 LST1O00453 97 aa12.67□□□□□ -0.38
PCF11-207ENST00000624931 NDUFA1O15239 70 aa12.67□□□□□ -0.38
PCF11-207ENST00000624931 STAB1Q9NY15 2570 aa12.66□□□□□ -0.38
PCF11-207ENST00000624931 TRAV8-3A0A0A6YYJ7 113 aa12.66□□□□□ -0.38
PCF11-207ENST00000624931 H7C423 109 aa12.66□□□□□ -0.38
PCF11-207ENST00000624931 ADAMTSL4-AS1Q5T5F5 129 aa12.66□□□□□ -0.38
PCF11-207ENST00000624931 CLUHP3Q96NS8 147 aa12.66□□□□□ -0.38
PCF11-207ENST00000624931 IGHV3-53P01767 116 aa12.65□□□□□ -0.38
PCF11-207ENST00000624931 NDUFV3P56181 108 aaKnown RBP12.65□□□□□ -0.38
PCF11-207ENST00000624931 BEAN1Q3B7T3 259 aa12.65□□□□□ -0.38
PCF11-207ENST00000624931 PPDPFQ9H3Y8 114 aa12.65□□□□□ -0.38
PCF11-207ENST00000624931 TEX49A0A1B0GTD5 131 aa12.64□□□□□ -0.39
PCF11-207ENST00000624931 C9orf66Q5T8R8 295 aa12.64□□□□□ -0.39
PCF11-207ENST00000624931 NOTCH3Q9UM47 2321 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms